EY703225

Overview
NameEY703225
Unique NameEY703225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.057e-23
Identity = 48/62 (77.42%), Postives = 58/62 (93.55%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            R ETA +++FSWGVANRG S+RVGR+TEK+GKGY EDRRPASNMDPY+VTS++AETTILW+P
Sbjct:  296 RHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.380e-23
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            R ETA I++FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI+W+P
Sbjct:  295 RHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIIWKP 356          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.380e-23
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            R ETA I++F WGVANRG SIRVGR+TEK+GKGY EDRRPASNMDPYVVTS++AETT+LW+P
Sbjct:  295 RHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.803e-23
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            R ETA I++FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPY+VTS++AETTI+W+P
Sbjct:  295 RHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYIVTSMIAETTIIWKP 356          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.075e-23
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            R ETA I++F WGVANRG SIRVGR+TEK GKGY EDRRPASNMDPYVVTS++AETTILW+P
Sbjct:  295 RHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.075e-23
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            R ETA I++F WGVANRG SIRVGR+TEK+GKGY EDRRPASNMDPYVVTS++A+TTILW+P
Sbjct:  295 RHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.016e-23
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            R ETA I++F WGVANRG SIRVGR+TEK+GKGY EDRRPASNMDPYVVTS++AE+TILW+P
Sbjct:  295 RHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.016e-23
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 194
            R ETA I++F WGVANRG S+RVGR+TEK GKGY EDRRPASNMDPY+VT+++AETTILWEP+
Sbjct:  297 RHETADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEPS 359          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.245e-23
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 3
Query:   12 ETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            ETA I++F WGVANRG SIRVGR+TEK+GKGY EDRRPASNMDPY+VTS++AETTILW P
Sbjct:  297 ETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.850e-23
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            R ETA I++F WGVANRG SIRVGR+TEK GKGY EDRRPASNMDPYVVTS++A+TTILW+P
Sbjct:  295 RHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
The following BLAST results are available for this feature:
BLAST of EY703225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
GLNA_PINSY1.057e-2377.42Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA3_MAIZE1.380e-2379.03Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA1_ALNGL1.380e-2379.03Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLN11_ORYSJ1.803e-2377.42Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA1_VITVI3.075e-2380.65Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_LOTJA3.075e-2379.03Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA2_VITVI4.016e-2379.03Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLN13_ORYSJ4.016e-2376.19Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLN11_ARATH5.245e-2380.00Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA_VIGAC6.850e-2379.03Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-017-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703225 ID=EY703225; Name=EY703225; organism=Citrus sinensis; type=EST; length=790bp
CCACGCGTCCGGAAACAGCTAGCATTGACTCATTTTCTTGGGGTGTGGCA
AATCGTGGTTGCTCAATCCGTGTGGGACGTGAAACTGAGAAGCAAGGCAA
AGGTTACTTGGAAGATAGGCGTCCAGCTTCAAACATGGACCCTTATGTAG
TGACCTCGTTACTGGCTGAAACTACAATATTGTGGGAACCCACACTTGAG
GCTGAAGCGCTAGCTGCTCAGAAGTTGGCATTGAATGTCTGAAGTTGATT
ATAGATCAACTGAAGAACTTGAGAAGCAGTCTCTTGGATTTAAATTGCCC
GTGCTTGGGGGAATACTTTTCCCTTTCCTTTTTAGTTCTTTAGGGAAGAA
CCTTGTAAATAAAAGGTCCCGAAGTTAATGTTCATGCCCAAGTTAATCGA
TCCTCAGATTGAAGATATATCCTTCAGATCAGATCAGTTCATAGTTGGTT
TCAGGTTTACGCATGTTTTACATGGATGCTTGGACCATTATTGTTCTTTT
GGACCATATCTTGAATGGCTTTTTATACCAGTTCATCAATGCTATCGCGT
GTTTTTTAGCCATAAAAGGAAAAAGTGTTGAGTAGAAAATTCTGAAGCTG
ACTTTTTTCTTCTGAAACATGTTTTGGTCAGAAGATGCTACATGTAGTGA
TTGTGTCCTAAGCTTTTTTATTTTGGCTTTTCCTTTTTTACTTTAACCTG
CCAAGAATGCAGAAAGAAATGGACTTNCCGGNNAATGGGGGTTTCGCCAA
AAGCAAATTCTGTCCCGTTACTGAAAAAAAAAAAAAGGGG
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