EY703225

Overview
NameEY703225
Unique NameEY703225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.866e-20
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 191
            R ETA I++FSWGVANRG S+ VG +TE+ GKGY EDRRPASNMDPYVVTS++AETTI+W+P
Sbjct:  295 RHETADINTFSWGVANRGASVAVG-QTEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 355          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.436e-20
Identity = 44/57 (77.19%), Postives = 54/57 (94.74%), Query Frame = 3
Query:   12 ETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTIL 182
            ETA I++FSWGVA+RG S+RVGR+TEK+GKGY EDRRP+SNMDPY+VTS++AETTIL
Sbjct:  297 ETADINTFSWGVADRGASVRVGRDTEKEGKGYFEDRRPSSNMDPYLVTSMIAETTIL 353          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.089e-20
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 3
Query:   12 ETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTIL 182
            ETA+I +F WGVANRG S+RVGR+TEK GKGY EDRRPASNMDPYVVT+++A+TTI+
Sbjct:  297 ETANISTFKWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTAMIADTTII 353          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.134e-16
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 3
Query:   12 ETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTIL 182
            ET+S++ FSWGVANRGCSIRVGR    +  GY EDRRP+SN+DPYVVT LL ETT+L
Sbjct:  178 ETSSMNDFSWGVANRGCSIRVGRMVPVEKCGYYEDRRPSSNLDPYVVTRLLVETTLL 234          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   12 ETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTIL 182
            ET+S+  FSWGVANRGCSIRVGR    +  GY EDRRPASN+D YVVT L+ ETTIL
Sbjct:  325 ETSSMSDFSWGVANRGCSIRVGRMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 381          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.807e-15
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTIL 182
            R ET  I +FS GVANRG SIRV R    QG GYLEDRRPASN+DPY VTS++AETTIL
Sbjct:  294 RHETGHISNFSSGVANRGASIRVPRHVASQGYGYLEDRRPASNIDPYRVTSIIAETTIL 352          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.360e-15
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTI 179
            R ET+S D FSWGVANRGCSIR+ R+   + KGYLEDRRP+SN DPY VT+++A++ +
Sbjct:  309 RHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSSNCDPYQVTAMIAQSIL 366          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAE 170
            R ET SIDSFSWGVANRG SIRV RET  +G GY EDRRPASN DPY VT +L +
Sbjct:  295 RHETGSIDSFSWGVANRGTSIRVPRETAAKGYGYFEDRRPASNADPYRVTKVLLQ 349          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.257e-15
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 3
Query:    6 RPETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAET 173
            R ET SI SFS GVANRGCSIR+ R   K+G GY EDRRPASN+DPY+VT ++ ET
Sbjct:  287 RHETGSIGSFSSGVANRGCSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMTET 342          
BLAST of EY703225 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.171e-14
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 3
Query:   12 ETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTIL 182
            ETAS+ +FS GVANRG SIR+ R    QG GYLEDRRPASN+DPY VT++L ETT+L
Sbjct:  300 ETASMTTFSAGVANRGASIRIPRHVGAQGYGYLEDRRPASNVDPYRVTAILVETTVL 356          
The following BLAST results are available for this feature:
BLAST of EY703225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
GLNA4_MAIZE1.866e-2074.19Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLN15_ARATH2.436e-2077.19Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA_NICPL7.089e-2075.44Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA_DUNSA2.134e-1670.18Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA1_CHLRE4.755e-1670.18Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_AGABI1.807e-1571.19Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_CAEEL2.360e-1562.07Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_GIBFU4.025e-1572.73Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_YARLI5.257e-1567.86Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_CRYNE1.171e-1468.42Glutamine synthetase OS=Cryptococcus neoformans GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-017-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703225 ID=EY703225; Name=EY703225; organism=Citrus sinensis; type=EST; length=790bp
CCACGCGTCCGGAAACAGCTAGCATTGACTCATTTTCTTGGGGTGTGGCA
AATCGTGGTTGCTCAATCCGTGTGGGACGTGAAACTGAGAAGCAAGGCAA
AGGTTACTTGGAAGATAGGCGTCCAGCTTCAAACATGGACCCTTATGTAG
TGACCTCGTTACTGGCTGAAACTACAATATTGTGGGAACCCACACTTGAG
GCTGAAGCGCTAGCTGCTCAGAAGTTGGCATTGAATGTCTGAAGTTGATT
ATAGATCAACTGAAGAACTTGAGAAGCAGTCTCTTGGATTTAAATTGCCC
GTGCTTGGGGGAATACTTTTCCCTTTCCTTTTTAGTTCTTTAGGGAAGAA
CCTTGTAAATAAAAGGTCCCGAAGTTAATGTTCATGCCCAAGTTAATCGA
TCCTCAGATTGAAGATATATCCTTCAGATCAGATCAGTTCATAGTTGGTT
TCAGGTTTACGCATGTTTTACATGGATGCTTGGACCATTATTGTTCTTTT
GGACCATATCTTGAATGGCTTTTTATACCAGTTCATCAATGCTATCGCGT
GTTTTTTAGCCATAAAAGGAAAAAGTGTTGAGTAGAAAATTCTGAAGCTG
ACTTTTTTCTTCTGAAACATGTTTTGGTCAGAAGATGCTACATGTAGTGA
TTGTGTCCTAAGCTTTTTTATTTTGGCTTTTCCTTTTTTACTTTAACCTG
CCAAGAATGCAGAAAGAAATGGACTTNCCGGNNAATGGGGGTTTCGCCAA
AAGCAAATTCTGTCCCGTTACTGAAAAAAAAAAAAAGGGG
back to top