EY703111

Overview
NameEY703111
Unique NameEY703111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.580e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGII 117
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.981e-28
Identity = 69/117 (58.97%), Postives = 81/117 (69.23%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF GQ     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPADSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGQDP-SPALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_SHESR (Malate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.981e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSQLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_SHESM (Malate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.981e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSQLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_SHEON (Malate dehydrogenase OS=Shewanella oneidensis GN=mdh PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 5.981e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.981e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATS-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_YERE8 (Malate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.812e-28
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALKGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPKALIGII 117
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_SHISS (Malate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.812e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_SHIDS (Malate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.812e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of EY703111 vs. ExPASy Swiss-Prot
Match: MDH_SHIBS (Malate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.812e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  275 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 619
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
The following BLAST results are available for this feature:
BLAST of EY703111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
MDH_SHEAM4.580e-2858.97Malate dehydrogenase OS=Shewanella amazonensis (st... [more]
MDH_SHEWM5.981e-2858.97Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_SHESR5.981e-2858.12Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHESM5.981e-2858.12Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHEON5.981e-2858.12Malate dehydrogenase OS=Shewanella oneidensis GN=m... [more]
MDH_ECOLC5.981e-2857.26Malate dehydrogenase OS=Escherichia coli (strain A... [more]
MDH_YERE87.812e-2858.12Malate dehydrogenase OS=Yersinia enterocolitica se... [more]
MDH_SHISS7.812e-2857.26Malate dehydrogenase OS=Shigella sonnei (strain Ss... [more]
MDH_SHIDS7.812e-2857.26Malate dehydrogenase OS=Shigella dysenteriae serot... [more]
MDH_SHIBS7.812e-2857.26Malate dehydrogenase OS=Shigella boydii serotype 4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-016-A06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703111 ID=EY703111; Name=EY703111; organism=Citrus sinensis; type=EST; length=620bp
CCACGCGTCCGTCAGCCCTTTGTTTTCATAATTATAAATTAAAAAACAGA
AGTAGATGTAGCACCACCGCATCAATTTCATTTTCTGTGAATTGTTTGTT
TTATCACAACTAAGTCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTC
AGGAGCAAATCAACGCATTGCGAGAATCGCTGCTCATCTCCATCCACCAA
CTCTCCAGATAGAGGGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGG
GCAAAAGGCGGGTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGG
AGGGATTGGACAGCCTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTT
CAGTTCTTCATCTTTATGATGTTGTCAATACTCCTGGGGTTACTGCCGAT
ATCAGTCACATGGATACAAATGCTGTGGTACGAGGATTTTTGGGGCAACA
GCAATTGGAGGATGCCCTCACGGGCATGGACATTGTAATCATTCCCGCTG
GTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGTTCAATATCAAT
GCCGGAATTGTTAAGACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAA
AGCTATTGTGAACTTGATTA
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