EY703098

Overview
NameEY703098
Unique NameEY703098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703098 vs. ExPASy Swiss-Prot
Match: AMN1_RAT (Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 47/172 (27.33%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  107 CPSLRVLSLWNT----SSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSS-ATYSLEKVKL-QRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLT 604
            C  L+ L+L +     +S+  EG+  +A+ C  L ++ L  C ++TD  ++ +A NC  L  + +  C SI +E L A+G+ CP L+ +     + V D G+ +L+S      LE++ +   +N+TD ++         +  L   G P +++    V+    G +KLK +T
Sbjct:   84 CRKLKALNLKSCREHRNSITSEGIKAVASSCSDLHEISLKGCCSVTDEGVLALALNCQLLKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTTQ-VSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEAALTACPQICILLFHGCPLITDHSREVLEQLIGSRKLKQVT 254          
BLAST of EY703098 vs. ExPASy Swiss-Prot
Match: ATB_ARATH (F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 45/193 (23.32%), Postives = 89/193 (46.11%), Query Frame = 2
Query:   59 STRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGL--QKLKSLTITSCMGITD 631
            S + +   G+  ++  C  L  + L     V D G   + + C  L+K ++     ++D A   +  +   L ++ + +C  I +E ++ +G  C NL+ + +  C+ + D  + S+  SA   L  + L   ++TD  +  +G   + +T L L G   VS+RG   + +  G   + L +L +    GI+D
Sbjct:  294 SFKRINDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCRNLKKFEVRGAFLLSDLAFHDVTGSSCSLQEVRLSTCPLITSEAVKKLG-LCGNLEVLDLGSCKSISDSCLNSV--SALRKLTSLNLAGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGISYLLNNEGTISKTLSTLDLGHMPGISD 483          
The following BLAST results are available for this feature:
BLAST of EY703098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AMN1_RAT1.519e-1127.33Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 ... [more]
ATB_ARATH4.419e-1123.32F-box protein At-B OS=Arabidopsis thaliana GN=ATB ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-015-H03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703098 ID=EY703098; Name=EY703098; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGCTGCCAGCCGTGGAGGACTGGGCAAGCTTTCCATCCATG
GAAACAATTCTACTCGTGGGGTGACAAGCGCTGGCCTTAGGGCTATTGCC
CGTGGCTGCCCATCTTTAAGGGTTCTTTCCCTCTGGAATACATCTTCTGT
AGGGGATGAAGGCCTTTGTGAGATTGCTAATGGATGTCATCAGCTAGAGA
AGCTTGACCTTTGCCAGTGTCCTGCTATTACTGACCGAGCTTTGATCACA
ATTGCAAAGAACTGCCCTAAATTGATTGATCTGACAATAGAGTCTTGCTC
AAGCATCGGAAATGAAGGTCTGCAGGCTGTTGGGAGATTCTGCCCCAATC
TGAAGTCCATTTCAATCAAGGATTGCCGCCTTGTTGGGGATCAAGGGATT
GCTAGTTTGTTGTCTTCAGCCACTTATTCTCTGGAGAAAGTGAAGCTGCA
AAGGTTGAACATTACTGATGTTTCTCTTGCTGTTATTGGACACTATGGCA
TGGCAGTTACTGATCTCTTCCTTACTGGCCTTCCACATGTGAGTGAGAGA
GGCTTCTGGGTTATGGGCAGTGGTCATGGGTTGCAAAAATTGAAGTCCTT
GACAATTACATCATGCATGGGAATAACGGATCTTGGGCCTTGAAGCTGTG
GGGCAAGGGGTGCCCCAAATTTGAAGCAGGTCTTCCTCCGAAAAATGGGC
CTTTTTATCTTAAAATGGACTGATCTCTTTTGCTAAACTTGTTTTCTCCC
TTGGAAGCCCTCCATTTGAAAGATTGCCCCAGGAACCACCACCTTGGGAT
TTTTGGGTCCCCTTTTAACTTGGTGAAAAGTTGAAGCTTTTTCCTTGGTA
ACTTGCTGGGGAATAGAGAAGAACGCAGGGGGCAGACAATAGTTCCTCAT
AAAT
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