EY703068

Overview
NameEY703068
Unique NameEY703068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703068 vs. ExPASy Swiss-Prot
Match: MIB2_CHICK (E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 56/203 (27.59%), Postives = 91/203 (44.83%), Query Frame = 1
Query:   16 LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ----IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL-DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCAVLLSRGAN 609
            LH+AA     ++  +L+  GA  +  N    TAL  A   G  EVVQ L    C+V   D   G T LH+A    +   I ++    VP++ F V N Q    +      G+ +  K   +   + V+   + G TALH+AALN + +  ++L+ +   +V+                 TPLH A   G++    +L+S G++
Sbjct:  502 LHYAAFGNQADVARVLMAKGAGADLLNNAKCTALYVAVSQGFTEVVQALCELNCDVNLPD-SHGDTPLHYAITADYKVIIEILTE--VPNIDFTVQNCQGFNLLHYSALKGNKLAIKKILARARQLVDSKKEDGFTALHLAALNNHKEVAEILIKEGRCDVNVKN----------NRNQTPLHLAIIQGHVGLVQLLVSEGSD 691          
BLAST of EY703068 vs. ExPASy Swiss-Prot
Match: ESPN_MOUSE (Espin OS=Mus musculus GN=Espn PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 70/245 (28.57%), Postives = 104/245 (42.45%), Query Frame = 1
Query:   13 PLHFAAAKGHNEIVA-LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMN--TQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVS--------AVTFHYGTSMD---------LIGA-------GSTPLHFAACGGNLKCCAVLLSRGANRMSLNCNGWLPLDVARMWG 666
            P H AAA G+   +  LL + G  V  ++  G T L  A R+GH +VV+ LL      +     +G   +H+AA  G +  ++L+V  +   V  +  N  T +     +G    +K      S   +  A  G+T LH AA  G+   +  L+   A+VS        A   H+  S           L GA       G TPLH AA  G L+CC +L   GA     + +G+   D+A   G
Sbjct:   73 PAHDAAATGYLSCLQWLLTQGGCRVQEKDNSGATVLHLAARFGHPDVVKWLLYQGGANSAITTDTGALPIHYAAAKGDLPSLKLLVGHYPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNPVLVWLVSF-ADVSFSEQDHDGATAMHFAASRGHTKVLSWLLLHGAEISQDLWGGTPLHDAAENGELECCQILAVNGAGLDVRDHDGYTAADLAEFNG 316          
The following BLAST results are available for this feature:
BLAST of EY703068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
MIB2_CHICK9.206e-1127.59E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus ... [more]
ESPN_MOUSE9.206e-1128.57Espin OS=Mus musculus GN=Espn PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-015-E05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703068 ID=EY703068; Name=EY703068; organism=Citrus sinensis; type=EST; length=867bp
CCACGCGTCCGCCCTCTTCATTTTGCTGCTGCCAAAGGCCATAATGAGAT
TGTGGCATTGTTACTTGAAAATGGAGCCGACGTTAATTCCAGGAATTATT
GCGGCCAGACCGCATTGATGCAAGCATGTCGATATGGGCACTGGGAAGTT
GTACAAACTCTTCTGCTCTTCAGATGTAATGTCACAAGAGCAGATTATCT
CAGTGGGAGGACAGCCCTACATTTTGCGGCTGTAAATGGGCATGTTAGAT
GTATTAGACTAGTTGTGGCTGATTTTGTTCCTAGTGTTCCTTTTGAAGTC
ATGAATACTCAGATCGAAGGCGATAGAGGGGACGGTTCCAGTGTGAAGAG
CAAGTGTGATCAAAGTGCCCTGTCCAAGTTTGTAAATAAGGCCGCAGATG
GGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGT
GTACAGCTTTTACTTGACCTTCATGCAAATGTATCTGCTGTGACATTTCA
TTATGGAACATCAATGGATTTGATAGGAGCTGGAAGCACTCCTTTGCACT
TTGCTGCTTGTGGGGGAAATCTAAAATGCTGCGCAGTCCTACTTTCAAGA
GGTGCGAATCGTATGTCTTTGAACTGCAATGGGTGGCTGCCTCTTGATGT
TGCTAGGATGTGGGGGCCCCATTGGCTCAAACCCTTGCTGCCACCAGTTC
TGGTGCTGATATTGCCAGAGTGCTCCGTTCAGGGAGGTGAGGGGGGCGCG
TGGGGGGGCCGGAGGCAGCCGAAGAGGGGGGGGTGGGGCGGCGAGGCCAC
GCCGGGGAATAGAAGAAAAACCACGCCGCCGCGGCGACGCAGCTGTGGGG
TGTCGCGGAGGGGCGCG
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