EY703052

Overview
NameEY703052
Unique NameEY703052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.426e-42
Identity = 82/150 (54.67%), Postives = 114/150 (76.00%), Query Frame = 3
Query:   12 EHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 461
            +  FE+  D+GAS T+P Q   +RKNG++++K+RPCK+VE+STSKTGKHGHAK H VGIDIF+ KK EDI PS+HN D P+V R D QLI IS+D F++L+TE+G+ ++DL++P  E L  Q++  F  GKDL+ TV+ + GEE + A+K
Sbjct:    5 DDQFET-TDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGE-LGEQLRLDFDSGKDLLCTVLKACGEECVIAIK 152          
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 3.426e-42
Identity = 82/142 (57.75%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   36 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 461
            DAGAS T+P Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIFNGKK EDI PS+HN D P++ R DYQLI I +DG++SLLTE+G  ++DL+LP + +L  +I+  F   +D+ ++V+S+M EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLP-EGDLGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 9.968e-42
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   36 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 461
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.900e-41
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   36 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 461
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.900e-41
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   36 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 461
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.900e-41
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   36 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 461
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.900e-41
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   36 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 461
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.079e-39
Identity = 84/156 (53.85%), Postives = 107/156 (68.59%), Query Frame = 3
Query:   12 EHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 479
            EH F+S  DAGAS T+P Q   +RK G++VIKNRPCK+V++STSKTGKHGHAK H V IDIF GKKLED+ PS+HN D P+V RTDYQ   I ED F+ L+   G  K D+++P  E L  +I+    EGKD  V V ++MGEE    +K+   K+
Sbjct:   11 EHTFDS-VDAGASATYPMQCSALRKGGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMPEGE-LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNKD 163          
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.079e-39
Identity = 78/142 (54.93%), Postives = 107/142 (75.35%), Query Frame = 3
Query:   36 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 461
            DAGAS TFP Q   +RKNG++V+K  PCK+VE+S SKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G   +DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of EY703052 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 3.318e-37
Identity = 74/126 (58.73%), Postives = 97/126 (76.98%), Query Frame = 3
Query:   36 DAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLV 413
            DAGAS TFP Q   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +I+  +  G++++
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
The following BLAST results are available for this feature:
BLAST of EY703052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF5A_DROME3.426e-4254.67Eukaryotic translation initiation factor 5A OS=Dro... [more]
IF5A2_CHICK3.426e-4257.75Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_RABIT9.968e-4256.34Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_RAT2.900e-4156.34Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE2.900e-4156.34Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN2.900e-4156.34Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN2.900e-4156.34Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5A_NEUCR2.079e-3953.85Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5AL_HUMAN2.079e-3954.93Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A1_CHICK3.318e-3758.73Eukaryotic translation initiation factor 5A-1 OS=G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-015-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703052 ID=EY703052; Name=EY703052; organism=Citrus sinensis; type=EST; length=863bp
CCACGCGTCCGGAGCACCACTTCGAATCGAAGGCTGATGCCGGTGCATCG
AAGACTTTCCCTCAGCAAGCTGGAACCATCCGCAAGAATGGTTATATTGT
CATCAAAAATCGTCCTTGCAAGGTTGTTGAAGTTTCCACTTCAAAGACTG
GCAAGCATGGACATGCCAAGTGCCACTTTGTGGGAATTGATATATTTAAT
GGAAAGAAGCTTGAAGATATTGTGCCTTCCTCCCACAATTGTGATGCTCC
CCATGTTACTCGCACTGACTATCAGCTGATTGATATATCCGAAGATGGTT
TTGTGAGCCTTTTAACTGAAACCGGAAACACCAAGGATGATCTGAGGCTT
CCTACCGATGAAAATCTGCTTAGCCAGATTAAAGATGGGTTTGCTGAAGG
AAAAGACCTTGTGGTGACCGTTATGTCGTCAATGGGAGAGGAGCAGATCT
GTGCCCTTAAGGACATTGGTCCTAAGAATTAACTATAATCCCATGGCATT
AGCTTTGGCTGATAGCAGGAGAACTCTTTCTTATGTTGCCCACATGGAGA
CTATCTACTATCGGTGTCCACAACAAACTTCCGTTAACATACGATTGTGG
GCTGGGGGACTACACTATCGCCGCGCTTGGGATAAAGGAAGTGGAAATAA
AGCAGGTGTCCATCATCTCCTTGTGAACATACTCTTTGTTCGCTGCATCG
CGCGACTTGACCAAATGTACGTATTTGATTTAAAAATGAATAAACCGGCG
GCGGTTCGGCGCGTTCACGGCTTCCGGCGAGGTGAGGCACATACGGCGGC
CTCCTGAGGCCACCGAAACTCCGGCGGGGAGGGGGTGGGTGCGGGAGCCC
CCCGCGCACGCCG
back to top