EY650407

Overview
NameEY650407
Unique NameEY650407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.371e-49
Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D  AFAELKVKEIKNG +AMFSMFGFFVQAIVTGKGPLENLADHLADPVN
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.371e-49
Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D  AFAELKVKEIKNG +AMFSMFGFFVQAIVTGKGPLENLADHLADPVN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.371e-49
Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D  AFAELKVKEIKNG +AMFSMFGFFVQAIVTGKGPLENLADHLADPVN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.044e-49
Identity = 94/102 (92.16%), Postives = 98/102 (96.08%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D  AFAELKVKEIKNG +AMFSMFGFFVQAIVTGKGPLENLADH+ADPVN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.044e-49
Identity = 94/102 (92.16%), Postives = 98/102 (96.08%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 771
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D  AFAELKVKEIKNG +AMFSMFGFFVQAIVTGKGPLENLADH+ADPVN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.785e-47
Identity = 94/110 (85.45%), Postives = 98/110 (89.09%), Query Frame = 1
Query:  445 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 771
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    D  AFAELKVKEIKNG +AMFSMFGFFVQAIVTGKGPLENLADHLADPVN
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.230e-31
Identity = 93/239 (38.91%), Postives = 120/239 (50.21%), Query Frame = 1
Query:   58 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-HIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFV-QAIVTGKGPLENLADHLADP 765
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + D   F ELK+KEIKNG +AM +  GF V Q+   G GPLENLA HLADP
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADP 228          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.219e-30
Identity = 83/190 (43.68%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  205 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFV-QAIVTGKGPLENLADHLADP 765
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + D   F ELKVKEIKNG +A+ ++ GF V Q+   G GPLENLA HLADP
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADP 229          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.492e-30
Identity = 82/206 (39.81%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  172 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLADDXRA-FAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPLENLADHLADP 765
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG   +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG      A   EL+ KEIKNG +AM ++ G + Q I TG GP++NL  HLADP
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.367e-30
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 1
Query:  466 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPLENLADHLADP 765
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADD   F ELKVKEIKNG +AM  M GF+ QAIVTG+GP+EN   HL DP
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106          
The following BLAST results are available for this feature:
BLAST of EY650407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB2D_SOLLC2.371e-4993.14Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.371e-4993.14Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.371e-4993.14Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC4.044e-4992.16Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.044e-4992.16Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA3.785e-4785.45Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU2.230e-3138.91Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC3.219e-3043.68Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC5.492e-3039.81Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_EUGGR9.367e-3066.99Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-F08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650407 ID=EY650407; Name=EY650407; organism=Citrus sinensis; type=EST; length=897bp
GCTTCTCCATTAAATTCCGCAATGGCAACCTCAACAATGGCTCTCTCCTC
ATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTAA
GCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCT
TCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCATT
CTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACG
GTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAAC
CGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGG
ATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGG
CCGTGTGGTTCAAGGCGGGAGCTCATATCTTCAGCGAGGGCGGGCTTGAC
TACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTG
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTT
GATCCATTGGGTTTGGCTGATGACCNNCGAGCTTTTGCTGAGCTCAAGGT
TAAGGAAATCAAGAATGGAANGGTGGCTATGTTCTCCATGTTTGGTTTCT
TCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGAC
CACTTGGCCGACCCTGTCAACACAATGCCTGGGCCTACGCCACCAACTTT
GTCCCCGNAAAGTGAGCTTCGGTTGATACATTANTAGCGTGGGAATGGNA
ANTGGAGTGATTGGTGATTGATGTGACTCTATTTCAACTGCGAAAAT
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