EY650407

Overview
NameEY650407
Unique NameEY650407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.517e-14
Identity = 67/204 (32.84%), Postives = 83/204 (40.69%), Query Frame = 1
Query:  214 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPL 735
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D      LKV EIK+  +AM +M  F+ +A   GK PL
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.671e-13
Identity = 66/204 (32.35%), Postives = 85/204 (41.67%), Query Frame = 1
Query:  214 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG--------------------YRIAGGPLGEVTDPLYPGGS-FDPLGLA---------DDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPL 735
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE                      R A        +  YPGG  FDPL LA          D      LK+ EIK+  +AM +M  F+ +A   GK PL
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.671e-13
Identity = 65/204 (31.86%), Postives = 84/204 (41.18%), Query Frame = 1
Query:  214 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPL 735
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D      LK+ EIK+  +AM +M  F+ +A   GK PL
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of EY650407 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 63/167 (37.72%), Postives = 79/167 (47.31%), Query Frame = 1
Query:  280 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG----EVTDPLYPGGSFDPLGLADDXRAFAELKVKEIKNGXVAMFSMFGFFVQAIVTGKGPLENLADHLADPV 768
            P  + + R  EV + R AML  +GCV+PELL  NGV F   VW K   + F                    A+ + QVV    +E +R  GG  G    E  D  YPG  FDP  L  +       K  EIKNG +AM  MFG  VQ  VT +GP+ NL +HL  P+
Sbjct:    1 PTVYERMRVAEVFNGRLAMLAIVGCVYPELLG-NGVWF--EVWNKVDFYRF--------------------ALISLQVV--APLEYWRGNGG-FGWDGEEKYDRSYPG--FDPCNLTTEYT-----KAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIEHLRHPL 134          
The following BLAST results are available for this feature:
BLAST of EY650407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB4A_SOLLC5.517e-1432.84Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL4.671e-1332.35Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC4.671e-1331.86Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
LH15_EUGGR3.027e-1237.72Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-F08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650407 ID=EY650407; Name=EY650407; organism=Citrus sinensis; type=EST; length=897bp
GCTTCTCCATTAAATTCCGCAATGGCAACCTCAACAATGGCTCTCTCCTC
ATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTAA
GCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCT
TCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCATT
CTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACG
GTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAAC
CGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGG
ATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGG
CCGTGTGGTTCAAGGCGGGAGCTCATATCTTCAGCGAGGGCGGGCTTGAC
TACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTG
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTT
GATCCATTGGGTTTGGCTGATGACCNNCGAGCTTTTGCTGAGCTCAAGGT
TAAGGAAATCAAGAATGGAANGGTGGCTATGTTCTCCATGTTTGGTTTCT
TCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGAC
CACTTGGCCGACCCTGTCAACACAATGCCTGGGCCTACGCCACCAACTTT
GTCCCCGNAAAGTGAGCTTCGGTTGATACATTANTAGCGTGGGAATGGNA
ANTGGAGTGATTGGTGATTGATGTGACTCTATTTCAACTGCGAAAAT
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