EY702997

Overview
NameEY702997
Unique NameEY702997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10028 contig Csv1_Contig10028:1..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 6.204e-31
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV ITNDGATILK+LE+EHPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++LV+ KIHPTS+ISGYR+
Sbjct:   47 DDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRL 123          

HSP 2 Score: 25.7942 bits (55), Expect = 6.204e-31
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  360 DSLVNCAKTSMSSKLV 407
            D L N AKTSMSSK++
Sbjct:  146 DCLTNTAKTSMSSKII 161          
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.052e-30
Identity = 59/77 (76.62%), Postives = 73/77 (94.81%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV +TNDGATIL +L++EHPA KVLVELA+ QD+EVGDGTTSVVI+AAE+L+RAN+LV+NKIHPT+II+GYR+
Sbjct:   52 DDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRL 128          

HSP 2 Score: 27.335 bits (59), Expect = 1.052e-30
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  360 DSLVNCAKTSMSSKLV 407
            +SL+N AKTSMSSK++
Sbjct:  151 ESLINVAKTSMSSKII 166          
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.370e-30
Identity = 61/77 (79.22%), Postives = 72/77 (93.51%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV ITNDGATILK+LE+EHPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++L + KIHPTS+ISGYR+
Sbjct:   47 DDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRL 123          

HSP 2 Score: 27.335 bits (59), Expect = 1.370e-30
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  360 DSLVNCAKTSMSSKLV 407
            D L+N AKTSMSSK++
Sbjct:  146 DCLINAAKTSMSSKII 161          
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.024e-30
Identity = 60/77 (77.92%), Postives = 72/77 (93.51%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DD+GDV +TNDGATILK LE+EHPA KVLVELA+LQD EVGDGTTSVVIVAAE+LKRA++LV+ K+HPT+II+GYR+
Sbjct:   51 DDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRL 127          

HSP 2 Score: 26.1794 bits (56), Expect = 3.024e-30
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  363 SLVNCAKTSMSSKLV 407
            S+VN AKTSMSSK++
Sbjct:  151 SVVNAAKTSMSSKII 165          
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.412e-28
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGNSCFTHPFSSIFPHFFNYMDSMQIC*RNIGCEGREAWKRFFSKLCQDKHVLEVGGDNDFFANLV 436
            DDIGD  +TNDGATIL +L+++HPA K+LVELA+ QDRE+GDGTTSVVI+A+E+LKRAN+LV+NKIHPT+II+G+RV          +I   F N     ++   ++   G+E            K    +G D+DFF+N+V
Sbjct:   55 DDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALR------EAI--RFIN-----EVLSTSVDTLGKETLINIAKTSMSSK---IIGADSDFFSNMV 180          
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.357e-27
Identity = 54/77 (70.13%), Postives = 71/77 (92.21%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            D+IG + +TNDGATIL+ ++IEHPAAK+LV+L+ELQD+EVGDGTT+VVI+AAE+LKRAN+LV  K+HPT IISG+R+
Sbjct:   48 DNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRL 124          

HSP 2 Score: 25.0238 bits (53), Expect = 6.357e-27
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  360 DSLVNCAKTSMSSKLV 407
            D +VN AKTSMSSK +
Sbjct:  147 DFIVNIAKTSMSSKTI 162          
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.115e-26
Identity = 53/77 (68.83%), Postives = 70/77 (90.91%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DD+GDV ITNDGATILK+L++EHPAAK+LV+LA+LQD EVGDGTTSVVI+AA +LK A++L+   +HPT++I+GYR+
Sbjct:   44 DDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRL 120          
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.040e-21
Identity = 41/77 (53.25%), Postives = 64/77 (83.12%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DD+GD+ +TNDG TILK + +EHPAAK+L+E+A+ Q++EVGDGTT+ V++A E+L++A +L+   +HPT +I GY++
Sbjct:   52 DDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQL 128          
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.277e-21
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYR 238
            D +GDV ITNDG TILK +++EHPAAK+++E+A+ QD EVGDGTT+ V++A E+LKRA +L+  +IHP  I +GYR
Sbjct:   54 DSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYR 129          
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.891e-21
Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 2
Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            D +GDV ITNDG TILK +++EHPAAK+++E+A+ QD EVGDGTT+ V++A E+LK+A +L+   IHPT I  GYR+
Sbjct:   54 DSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRM 130          
The following BLAST results are available for this feature:
BLAST of EY702997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
TCPA1_MOUSE6.204e-3180.52T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
TCPA_SCHPO1.052e-3076.62T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPA_MACFA1.370e-3079.22T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
TCPA_CAEEL3.024e-3077.92T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPA_YEAST3.412e-2848.59T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPA_DICDI6.357e-2770.13T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPA_SCHMA7.115e-2668.83T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
THS_METTL4.040e-2153.25Thermosome subunit OS=Methanococcus thermolithotro... [more]
THSB_ARCFU5.277e-2159.21Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THSA_ARCFU6.891e-2158.44Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-F07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702997 ID=EY702997; Name=EY702997; organism=Citrus sinensis; type=EST; length=822bp
CCACGCGTCCGATGACATTGGTGATGTAAAAATAACTAACGATGGTGCTA
CAATTCTCAAGATGTTAGAAATTGAGCATCCAGCTGCGAAGGTACTTGTG
GAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGGGATGGAACAACATCAGT
GGTTATTGTTGCTGCAGAGATGCTGAAGAGGGCAAATGATCTGGTGAGGA
ATAAGATTCACCCAACATCTATTATCAGTGGATACAGAGTGGGTAACTCT
TGTTTCACTCATCCTTTTTCCTCCATATTTCCTCACTTTTTTAATTATAT
GGACAGCATGCAAATATGTTGAAGAAACATTGGTTGTGAAGGTAGAGAAG
CTTGGAAAAGATTCTTTAGTAAATTGTGCCAAGACAAGCATGTCCTCGAA
GTTGGTGGTGACAACGACTTCTTTGCTAATTTGGTGTGCCTTTGTCCCAA
AAATATGGATTTTCATTGATATATGTTCATATTCGTCTCACACCTTAATC
CTGCTTGCCATTATGCTGTATTTCCCCAACACTGAATTGATTACTGCAAC
ATCTATCAATATCTTATCTTAACCGAAAAGAAAAGAAAGAAACATTAATC
TCTATTATCTATTACTTATTTTAATTGTAATTAATGTTTTAATTTCTGTC
TAGGTTGGTAGATACAGTTCAGTCGGTAAAGATGACTAATCAACAAAGGG
GAGTCAACTACCCAATTAAGATTTGTATTTTTTGATTGTTCAAATATATT
GCCTGTAAGAACCTTGTATATTGATCCTATTATCATTATGGGATTGAAAA
GATGTGTTAAAAAAAAAAAAAA
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