EY702997

Overview
NameEY702997
Unique NameEY702997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10028 contig Csv1_Contig10028:1..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 28/74 (37.84%), Postives = 49/74 (66.22%), Query Frame = 2 
Query:   20 GDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            GD+K+T DG  +L+ ++I+HP A ++ ++A  QD   GDGTTS V++  E+LK+A+  +   +HP  +  G+ +
Sbjct:   51 GDIKLTKDGNVLLQEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVAEGFEI 124
[Close]
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:   20 GDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            GDVK+T DG  +L  ++I+HP A ++ ++A  QD   GDGTTS V++  E+LK+A+  +   +HP  I  G+ +
Sbjct:   52 GDVKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEI 125
[Close]
BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPB_ENCCU (T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi GN=CCT2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:   26 VKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGNSCFTHPFSSI 277
            V +TNDGA IL  L I+ P+A++L+  +  QD E GDGTTSV I+A+ ++K A  L   ++HPT I+ GYR+  +      SSI
Sbjct:   52 VNVTNDGAFILNNLMIDSPSARILIGSSTGQDWEEGDGTTSVAILASLLVKEAGKL---EMHPTKILRGYRMAQAKCEEILSSI 132
The following BLAST results are available for this feature:
BLAST of EY702997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
TCPZ_CHICK4.950e-1137.84T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPW_BOVIN4.950e-1140.54T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]
TCPB_ENCCU4.950e-1145.24T-complex protein 1 subunit beta OS=Encephalitozoo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-F07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702997 ID=EY702997; Name=EY702997; organism=Citrus sinensis; type=EST; length=822bp
CCACGCGTCCGATGACATTGGTGATGTAAAAATAACTAACGATGGTGCTA
CAATTCTCAAGATGTTAGAAATTGAGCATCCAGCTGCGAAGGTACTTGTG
GAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGGGATGGAACAACATCAGT
GGTTATTGTTGCTGCAGAGATGCTGAAGAGGGCAAATGATCTGGTGAGGA
ATAAGATTCACCCAACATCTATTATCAGTGGATACAGAGTGGGTAACTCT
TGTTTCACTCATCCTTTTTCCTCCATATTTCCTCACTTTTTTAATTATAT
GGACAGCATGCAAATATGTTGAAGAAACATTGGTTGTGAAGGTAGAGAAG
CTTGGAAAAGATTCTTTAGTAAATTGTGCCAAGACAAGCATGTCCTCGAA
GTTGGTGGTGACAACGACTTCTTTGCTAATTTGGTGTGCCTTTGTCCCAA
AAATATGGATTTTCATTGATATATGTTCATATTCGTCTCACACCTTAATC
CTGCTTGCCATTATGCTGTATTTCCCCAACACTGAATTGATTACTGCAAC
ATCTATCAATATCTTATCTTAACCGAAAAGAAAAGAAAGAAACATTAATC
TCTATTATCTATTACTTATTTTAATTGTAATTAATGTTTTAATTTCTGTC
TAGGTTGGTAGATACAGTTCAGTCGGTAAAGATGACTAATCAACAAAGGG
GAGTCAACTACCCAATTAAGATTTGTATTTTTTGATTGTTCAAATATATT
GCCTGTAAGAACCTTGTATATTGATCCTATTATCATTATGGGATTGAAAA
GATGTGTTAAAAAAAAAAAAAA
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