EY702997 | Citrus Genome Database

Overview


Name	EY702997
Unique Name	EY702997
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	822

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10028	contig	Csv1_Contig10028:1..822.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.030e-16
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYR 238
            D +G + +TNDG  IL+ + ++HPAAK ++E+A  QD EVGDGTTSV+++A EML  A   ++ +IHPT II  YR
Sbjct:   53 DPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYR 128

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.030e-16
Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYR 238
            D +G + +TNDG  IL+ ++++HPAAK ++E++  QD EVGDGTTSV+I+A EML  A   +  ++HPT +IS YR
Sbjct:   52 DPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYR 127

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.215e-16
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGNSCFTHPFSSI 277
            D  G   I+NDGATILK+L++ HPAAK LV++A+ QD EVGDGTTSV ++AAE LK+    V   +HP  II  +R       +    I
Sbjct:   51 DGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEI 139

HSP 2 Score: 20.7866 bits (42), Expect = 1.215e-16
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3

Query:  366 LVNCAKTSMSSKLV 407
            L  CA T++SSKL+
Sbjct:  155 LEKCAMTALSSKLI 168

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.215e-16
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGNSCFTHPFSSI 277
            D  G   I+NDGATILK+L++ HPAAK LV++A+ QD EVGDGTTSV ++AAE LK+    V   +HP  II  +R       +    I
Sbjct:   51 DGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEI 139

HSP 2 Score: 20.7866 bits (42), Expect = 1.215e-16
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3

Query:  366 LVNCAKTSMSSKLV 407
            L  CA T++SSKL+
Sbjct:  155 LEKCAMTALSSKLI 168

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.215e-16
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGNSCFTHPFSSI 277
            D  G   I+NDGATILK+L++ HPAAK LV++A+ QD EVGDGTTSV ++AAE LK+    V   +HP  II  +R       +    I
Sbjct:   51 DGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEI 139

HSP 2 Score: 20.7866 bits (42), Expect = 1.215e-16
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3

Query:  366 LVNCAKTSMSSKLV 407
            L  CA T++SSKL+
Sbjct:  155 LEKCAMTALSSKLI 168

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.215e-16
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGNSCFTHPFSSI 277
            D  G   I+NDGATILK+L++ HPAAK LV++A+ QD EVGDGTTSV ++AAE LK+    V   +HP  II  +R       +    I
Sbjct:   51 DGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEI 139

HSP 2 Score: 20.7866 bits (42), Expect = 1.215e-16
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3

Query:  366 LVNCAKTSMSSKLV 407
            L  CA T++SSKL+
Sbjct:  155 LEKCAMTALSSKLI 168

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.345e-16
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 2

Query:   32 ITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            ITNDGATIL  + I++PAAK+LV+++  QD EVGDGTTSV ++A E+L+    LV+ K+HP +IISG+R+
Sbjct:   62 ITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRL 131

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.757e-16
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGY 235
            D +G + ITNDG  IL+ +++ HP AK ++EL+   D EVGDGTTSV+I+A EML  A   VR  IHPT I+ GY
Sbjct:   54 DPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGY 128

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.757e-16
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYR 238
            D +G V +TNDG  IL+ +E+ HPAAK ++ELA  QD EVGDGTTSV+I+A E+L  A+ L+  KIHP  +I  ++
Sbjct:   50 DPVGSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFK 125

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.757e-16
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYR 238
            D  GDV ITNDGATILK +++ HPAA++LVEL++ QD E GDGTTSVVI+A  +L     L++  IHPT I   ++
Sbjct:   63 DGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQ 138

The following BLAST results are available for this feature:

BLAST of EY702997 vs. ExPASy Swiss-Prot

BLAST of EY702997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133


Match Name	E-value	Identity	Description
TCPG_DROME	1.030e-16	51.32	T-complex protein 1 subunit gamma OS=Drosophila me...	[more]
TCPG_BOVIN	1.030e-16	50.00	T-complex protein 1 subunit gamma OS=Bos taurus GN...	[more]
TCPH_PONAB	1.215e-16	48.31	T-complex protein 1 subunit eta OS=Pongo abelii GN...	[more]
TCPH_MOUSE	1.215e-16	48.31	T-complex protein 1 subunit eta OS=Mus musculus GN...	[more]
TCPH_HUMAN	1.215e-16	48.31	T-complex protein 1 subunit eta OS=Homo sapiens GN...	[more]
TCPH_BOVIN	1.215e-16	48.31	T-complex protein 1 subunit eta OS=Bos taurus GN=C...	[more]
TCPB_DICDI	1.345e-16	57.14	T-complex protein 1 subunit beta OS=Dictyostelium ...	[more]
TCPG_THAWE	1.757e-16	53.33	T-complex protein 1 subunit gamma OS=Thalassiosira...	[more]
TCPG_SCHPO	1.757e-16	52.63	T-complex protein 1 subunit gamma OS=Schizosacchar...	[more]
TCPD_RAT	1.757e-16	55.26	T-complex protein 1 subunit delta OS=Rattus norveg...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-014-F07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702997 ID=EY702997; Name=EY702997; organism=Citrus sinensis; type=EST; length=822bp
CCACGCGTCCGATGACATTGGTGATGTAAAAATAACTAACGATGGTGCTA
CAATTCTCAAGATGTTAGAAATTGAGCATCCAGCTGCGAAGGTACTTGTG
GAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGGGATGGAACAACATCAGT
GGTTATTGTTGCTGCAGAGATGCTGAAGAGGGCAAATGATCTGGTGAGGA
ATAAGATTCACCCAACATCTATTATCAGTGGATACAGAGTGGGTAACTCT
TGTTTCACTCATCCTTTTTCCTCCATATTTCCTCACTTTTTTAATTATAT
GGACAGCATGCAAATATGTTGAAGAAACATTGGTTGTGAAGGTAGAGAAG
CTTGGAAAAGATTCTTTAGTAAATTGTGCCAAGACAAGCATGTCCTCGAA
GTTGGTGGTGACAACGACTTCTTTGCTAATTTGGTGTGCCTTTGTCCCAA
AAATATGGATTTTCATTGATATATGTTCATATTCGTCTCACACCTTAATC
CTGCTTGCCATTATGCTGTATTTCCCCAACACTGAATTGATTACTGCAAC
ATCTATCAATATCTTATCTTAACCGAAAAGAAAAGAAAGAAACATTAATC
TCTATTATCTATTACTTATTTTAATTGTAATTAATGTTTTAATTTCTGTC
TAGGTTGGTAGATACAGTTCAGTCGGTAAAGATGACTAATCAACAAAGGG
GAGTCAACTACCCAATTAAGATTTGTATTTTTTGATTGTTCAAATATATT
GCCTGTAAGAACCTTGTATATTGATCCTATTATCATTATGGGATTGAAAA
GATGTGTTAAAAAAAAAAAAAA