EY702992

Overview
NameEY702992
Unique NameEY702992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702992_ssr848 microsatellite EY702992_ssr848:848..859. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY702992 vs. ExPASy Swiss-Prot
Match: CAD96_DROME (Tyrosine kinase receptor Cad96Ca OS=Drosophila melanogaster GN=Cad96Ca PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 3 
Query:   42 TVKVGDFGLSR--LKHETSLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELAT-EKIPWDNLNSMQVIGAVGFMNQRLEIPKDVDPRWAAIVESCWHSDPQCRPSFQELV---DKLRDLQRQYFQASR 428
            T KV DFG +R  +  +       GK   +WMA E L +     KSD++SFG+++WE+ T    P+  +++  V+  V     RLE P+        I+  CW  DPQ RP F E++   DKL   +  Y +  R
Sbjct:  623 TCKVADFGFARDVITSKIYERKSEGKLPIRWMATESLYDNIFSVKSDIWSFGILMWEIVTLGSTPYPGISAADVMRKVR-DGYRLEKPEHCRRELYNIMYYCWSHDPQERPLFAEIIQMLDKLLHTEMDYIELER 756
The following BLAST results are available for this feature:
BLAST of EY702992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 311
Match NameE-valueIdentityDescription
CAD96_DROME9.845e-1133.33Tyrosine kinase receptor Cad96Ca OS=Drosophila mel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-F02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702992 ID=EY702992; Name=EY702992; organism=Citrus sinensis; type=EST; length=906bp
TCCTCGACCCACGCGTCCGATCTTCTAGTTCCCAACACTGGACTGTCAAG
GTTGGTGATTTTGGTCTGTCACGTCTCAAGCATGAGACATCTCTCACCAC
CAAGACTGGGAAGGGAACTCCTCAATGGATGGCACCGGAAGTTCTCCGAA
ATGAACCCTCCGATGAGAAGTCTGATGTATACAGCTTTGGAGTTATATTA
TGGGAGCTCGCCACTGAGAAGATCCCTTGGGATAATCTCAACTCAATGCA
GGTGATTGGAGCTGTAGGGTTCATGAACCAACGCTTAGAGATCCCAAAAG
ATGTGGATCCACGGTGGGCTGCTATAGTTGAGAGCTGCTGGCACAGTGAT
CCACAGTGCAGGCCATCATTTCAGGAACTGGTGGACAAGCTTCGAGATCT
GCAGAGACAATACTTCCAGGCATCTCGATCAACAGTAGGAGATAGCACCC
AGAAGGAATTGTAGACCATATTCACATTGTTTCCCTGTTCCGTTGCTGAA
ACACACGTCATTGCAAGTAGAAGAATCAGGCATTATTTTTCACAAAAGAT
TTACTTTCTTGGCTGGTAAACAGCTGGTTACAACAGATTTGCCACTCAAA
AGGCTTGAGCTATTGGCCCCGCATAATTCACAGCTACCAGACAATGAAAG
ATAGTAAGAAAAAAAGTTTATAAAGCCAAAGGGTGGGTAGTTGGCATAAT
GTGAGCTGCCTAATTTTGATGGTGATTGCTTTGCCAGTTTGCCTGGCTGG
GAAAGGTTATTTTTTTATATAACTGGTGTGCAAAAATCTTCAGATACTGT
CCGACCGGCTTTGTGTACTGGAACCATGTTTGGCTGAATTACCTTTTTAA
ATAAATAAAAAAAGGCGGCGCGCCCTAAGGATCCAATTTCGTCCCCGGTC
ATGGGA
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