EY650349

Overview
NameEY650349
Unique NameEY650349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.571e-103
Identity = 189/241 (78.42%), Postives = 206/241 (85.48%), Query Frame = 1
Query:   85 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAG-GPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPV 795
            F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGY +AG GPLGE  D LYPGGS DPLGLA DPEAFAELKV+  K+G  +       FFVQAI TGK P+ENLADHLADPV
Sbjct:   13 FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNG-RLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 252          
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 7.799e-103
Identity = 187/242 (77.27%), Postives = 206/242 (85.12%), Query Frame = 1
Query:  103 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAGGPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPV 795
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGY +AGGPLGE+TDP+YPGG+ DPLGLADDP+AFAELKV+  K+G  +       FFVQAI TGK P+ENLADHLADPV
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNG-RLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 263          
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 7.799e-103
Identity = 188/241 (78.01%), Postives = 205/241 (85.06%), Query Frame = 1
Query:   85 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAG-GPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPV 795
            F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGY +AG GPLGE  D LYPGGS DPLGLA DPEAFAELKV+  K+G  +       FFVQAI TGK P+ENLADHLADPV
Sbjct:   13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNG-RLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 252          
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.870e-102
Identity = 185/242 (76.45%), Postives = 206/242 (85.12%), Query Frame = 1
Query:  103 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAGGPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPV 795
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGY +AGGPLGE+TDP+YPGG+ DPLGLADDP+AFA++KV+  K+G  +       FFVQAI TGK P+ENLADHLADPV
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNG-RLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 263          
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 8.070e-100
Identity = 189/237 (79.75%), Postives = 200/237 (84.39%), Query Frame = 1
Query:   91 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAGGPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPV 795
            G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGP SGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGY IAGGPLGE+TDP+YPGGS DPLGLADDPEA AELKV+  K+G  +       FFVQAI TGK PLENLADHLADPV
Sbjct:   15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNG-RLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 241          
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 2.198e-97
Identity = 176/214 (82.24%), Postives = 186/214 (86.92%), Query Frame = 1
Query:  160 TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAGGPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPV 795
            T  K  SS SPW+GPD VKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGY IAGGPLGE+ DPLYPGGS DPLGLA+ PEAFAELKV+  K+G  +       FFV AI TGK PLENLADHLADPV
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNG-RLAMFSMFGFFVPAIVTGKGPLENLADHLADPV 213          
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 353.599 bits (906), Expect = 8.351e-97
Identity = 173/222 (77.93%), Postives = 191/222 (86.04%), Query Frame = 1
Query:  136 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAGGPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPV 795
            GGR+SMR+T   + +S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGY + GGPLGE  DP+YPGG+ DPLGLADDP+AFAELKV+  K+G  +       FFVQAI TGK P+ENL DHLADPV
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNG-RLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250          
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.091e-96
Identity = 172/220 (78.18%), Postives = 190/220 (86.36%), Query Frame = 1
Query:  142 RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAGGPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPV 795
            R++MR+T SKS  S + WYG DR K+LGP SGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGY +AGGPLGE+TDP+YPGGS DPLGLADDP+ FAELKV+  K+G  +       FFVQAI TGK PLENL DHLADPV
Sbjct:   35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG-RLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253          
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 3.174e-96
Identity = 176/233 (75.54%), Postives = 193/233 (82.83%), Query Frame = 1
Query:  121 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAGGPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPVI 798
            NELS        R+ M    SK+  SGS WYG DR  YLGP SG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGY +AGGPLGE+ DP+YPGGS DPLGLADDPEAFAELKV+  K+G  +       FFVQAI TGK P+ENL+DHLADP +
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNG-RLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAV 251          
BLAST of EY650349 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 9.234e-96
Identity = 174/223 (78.03%), Postives = 186/223 (83.41%), Query Frame = 1
Query:  139 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYXIAGGPLGELTDPLYPGGSSDPLGLADDPEAFAELKVR--KSGLEVGYVLHVRFFVQAIGTGKAPLENLADHLADPV 795
            GRI+MRKT +K     SGSPWYG DRV YLGPLSG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVLMGAVEGY +AGG LGE+ DPLY GGS DPLGL DDPE FAELKV+  K+G  +       FFVQAI TGK P+ENLADHL DPV
Sbjct:   28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNG-RLAMFSMFGFFVQAIVTGKGPIENLADHLTDPV 249          
The following BLAST results are available for this feature:
BLAST of EY650349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB21_ARATH1.571e-10378.42Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2A_PINSY7.799e-10377.27Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_ARATH7.799e-10378.01Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PYRPY3.870e-10276.45Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_SOYBN8.070e-10079.75Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA2.198e-9782.24Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_GOSHI8.351e-9777.93Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2_PHYPA1.091e-9678.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU3.174e-9675.54Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB48_MAIZE9.234e-9678.03Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-A10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650349 ID=EY650349; Name=EY650349; organism=Citrus sinensis; type=EST; length=865bp
TACACAGCTTCTATTGCTTACCCAGCTGGTGCTTCTGGATTAAATTCCTC
AATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCCG
TGAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCC
ATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGG
CCCGGACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCT
ACTTGACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGGGCTT
TCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCA
CTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCT
TGGCCCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGA
GCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTT
GATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGA
TGGGAGCCGTTGAGGGTTACANAATTGCTGGAGGGCCGCTCGGTGAACTG
ACTGACCCATTGTACCCAGGTGGCAGCTCTGATCCATTGGGTTTGGCTGA
TGACCCGGAGGCTTTTGCTGAGCTCAAGGTAAGGAAATCAGGATTGGAAG
TGGGCTATGTTCTCCATGTTCGGTTCTTCGTTCAGGCCATTGGCACCGGC
AAGGCACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCATAAC
AATGCCTGGGCCTACGCCACCACTTTGTTCCCGGGAAGTGACCTCCGGTG
ATAGAACTTTTCTCT
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