EY702980

Overview
NameEY702980
Unique NameEY702980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.833e-54
Identity = 112/207 (54.11%), Postives = 134/207 (64.73%), Query Frame = 3
Query:   60 ATSAIQQSAFAGQTA-LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            AT A+  S+FAG+   +  S+E  R       G++TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIH RW MLGALGCVFPE+ ++NG KFGE VWFKAG+QIF +GGLDYLGNP+    ++       Q+ L G  +              P   G  F+P GL + P
Sbjct:    4 ATMALSSSSFAGKAVNVPSSSEITRN------GKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDP 204          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.006e-54
Identity = 115/206 (55.83%), Postives = 135/206 (65.53%), Query Frame = 3
Query:   60 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            AT A+   +FAG+ A++ S       G    G+ TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NG KFGE VWFKAG+QIFS+GGLDYLGNP+    ++       Q+ L G  +              P   G  F+P GL + P
Sbjct:    4 ATMALSSPSFAGK-AVKFSPSSSEITG---NGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDP 205          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.539e-54
Identity = 107/176 (60.80%), Postives = 125/176 (71.02%), Query Frame = 3
Query:  153 GRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            GRITMR+T    P+++     WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NG KFGE VWFKAG+QIFS+GGLDYLGNP+    ++       Q+ L G  +              P   G  F+P GL + P
Sbjct:   31 GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 205          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.539e-54
Identity = 119/212 (56.13%), Postives = 140/212 (66.04%), Query Frame = 3
Query:   57 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWG-LSKDXXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NG KFGE VWFKAGAQIFS+GGLDYLG+P     ++       Q+ L G +               P   G  F+P GL + P
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDP 216          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.539e-54
Identity = 113/207 (54.59%), Postives = 133/207 (64.25%), Query Frame = 3
Query:   60 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWG-LSKDXXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            +T A+  +AFAG+     S+ F          R+TMR+T   A       S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NG KFGE VWFKAG+QIFS+GGLDYLGNP+    ++       Q+ L G +               P   G  F+P GL + P
Sbjct:    4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDP 203          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.539e-54
Identity = 114/206 (55.34%), Postives = 134/206 (65.05%), Query Frame = 3
Query:   60 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWG-LSKDXXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            +T A+   +FAG  A++ S       G    G+  MR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NG KFGE VWFKAG+QIFS+GGLDYLGNP+    ++       Q+ L G +               P   G  F+P GL + P
Sbjct:    4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDP 205          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.540e-54
Identity = 119/212 (56.13%), Postives = 140/212 (66.04%), Query Frame = 3
Query:   57 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWG-LSKDXXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NG KFGE VWFKAGAQIFS+GGLDYLG+P     ++       Q+ L G +               P   G  F+P GL + P
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDP 216          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.540e-54
Identity = 121/241 (50.21%), Postives = 143/241 (59.34%), Query Frame = 3
Query:   60 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP--IICLN*REGAQKRLHG*SSMF*LFH*VLLLGRG 761
            AT A+  S FAG+      +       +   G+ TMR+T   A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG KFGE VW KAG+QIFS+GGLDYLGNP+    ++       Q+ L G  +              P   G  F+P GL   P     L  +E    RL    SMF  F   ++ G+G
Sbjct:    4 ATMALSSSTFAGKVVKLSPSSSE----ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRL-AMFSMFGFFIQAIVTGKG 239          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.115e-53
Identity = 112/207 (54.11%), Postives = 132/207 (63.77%), Query Frame = 3
Query:   60 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            +T A+  +AFAG+     S+ F          R+TMR+T   A       S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NG KFGE VWFKAG+QIFS+GGLDYLGNP+    ++       Q+ L G  +              P   G  F+P GL + P
Sbjct:    4 STMALSSTAFAGKAVNVPSSSFGE-------ARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 203          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.115e-53
Identity = 106/177 (59.89%), Postives = 122/177 (68.93%), Query Frame = 3
Query:  141 VADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            +    + TMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NG KFGE VWFKAG+QIFS+GGLDYLGNP+    ++       Q+ L G  +              P   G  F+P GL + P
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDP 193          
The following BLAST results are available for this feature:
BLAST of EY702980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB21_PETSP3.833e-5454.11Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_PETSP5.006e-5455.83Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2A_SPIOL6.539e-5460.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY6.539e-5456.13Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE6.539e-5454.59Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB27_TOBAC6.539e-5455.34Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2A_PINSY8.540e-5456.13Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_PETSP8.540e-5450.21Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_MAIZE1.115e-5354.11Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_CUCSA1.115e-5359.89Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-E02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702980 ID=EY702980; Name=EY702980; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAA
GAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGAC
CGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACG
GTGGCCGTATCACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATC
TGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAAC
ACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCG
CTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAG
GTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCC
TGAAATCCTCTCCAAGAATGGAGCGAAGTTCGGCGAACCAGTTTGGTTCA
AAGCTGGCGCTCAAATATTCTCTAAAGGTGGCCTTGACTATCTTGGGAAC
CCCAACTCATTCATGCTCAGAACATTTTGGCTATCCGGGCCTGCCCAGTT
GTGCTTATGGGGTTTGTCGAAAGATACGAACTGGTGGCGGACCTCTTGGT
GAAGGACTTGACCCACTTAAACCGGGCGGTGTTTTGAACCCCCGGGTTTG
GTGAATTACCCGATTATTTGCTTGAATTAAAGGGAAGGAGCCCAAAAAAG
ACTGCATGGTTAATCTTCCATGTTTTGATTATTTCATTAGGTTTTATTGT
TGGGAAGGGGCTCATTTATAACATCTTCGTCCTCCTGGTGTGATCGGGGG
CCACCTTGTCCGGGGGTATGGCTATTATTTGTTTCTCGGTAAAAAACGCG
CTCCTG
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