EY702980

Overview
NameEY702980
Unique NameEY702980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.814e-15
Identity = 50/142 (35.21%), Postives = 74/142 (52.11%), Query Frame = 3
Query:   60 ATSAIQQSAFAGQTALRQSNEF-VRKVGVADGGRITMRR-----TVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQ 464
            A+S I   AF+  ++ R  +     K     G R+ + +     T +SA    +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G     P W+ AG Q
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ 144          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.128e-12
Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  402 EILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLWGLSKD-XXXXXXXXXXXXPT*TGRCFEPPGLVNYP 662
            E+L KNG KFGE VWFKAGAQIFS+GGLDYLGNPN    ++       Q+ L GL +              P   G  F+P GL + P
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDP 88          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  246 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQI 467
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          
BLAST of EY702980 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 35/104 (33.65%), Postives = 54/104 (51.92%), Query Frame = 3
Query:  249 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGAKFGEPVWFKAGAQIFSKGGLDYLGNPNSFMLRTFWLSGPAQLCLW 560
            +P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+ +  G     P W+ AG +       +Y  + ++  +  F LS   ++  W
Sbjct:   62 SPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKE-------EYFASSSTLFVIEFILSHYVEIRRW 157          
The following BLAST results are available for this feature:
BLAST of EY702980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB12_SOLLC7.814e-1535.21Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_PINSY2.128e-1246.59Chlorophyll a-b binding protein type 2 member 2 (F... [more]
LH18_EUGGR3.073e-1143.24Light-harvesting complex I LH38 proteins (Fragment... [more]
CB24_PEA5.241e-1133.65Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-E02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702980 ID=EY702980; Name=EY702980; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAA
GAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGAC
CGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACG
GTGGCCGTATCACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATC
TGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAAC
ACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCG
CTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAG
GTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCC
TGAAATCCTCTCCAAGAATGGAGCGAAGTTCGGCGAACCAGTTTGGTTCA
AAGCTGGCGCTCAAATATTCTCTAAAGGTGGCCTTGACTATCTTGGGAAC
CCCAACTCATTCATGCTCAGAACATTTTGGCTATCCGGGCCTGCCCAGTT
GTGCTTATGGGGTTTGTCGAAAGATACGAACTGGTGGCGGACCTCTTGGT
GAAGGACTTGACCCACTTAAACCGGGCGGTGTTTTGAACCCCCGGGTTTG
GTGAATTACCCGATTATTTGCTTGAATTAAAGGGAAGGAGCCCAAAAAAG
ACTGCATGGTTAATCTTCCATGTTTTGATTATTTCATTAGGTTTTATTGT
TGGGAAGGGGCTCATTTATAACATCTTCGTCCTCCTGGTGTGATCGGGGG
CCACCTTGTCCGGGGGTATGGCTATTATTTGTTTCTCGGTAAAAAACGCG
CTCCTG
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