EY702976

Overview
NameEY702976
Unique NameEY702976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.064e-27
Identity = 65/101 (64.36%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  419 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVRLLSLGRAN*EPLR-HIADPV 718
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV+ +  G+   E L  HIADPV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPV 252          
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.064e-27
Identity = 65/101 (64.36%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  419 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVRLLSLGRAN*EPLR-HIADPV 718
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV+ +  G+   E L  HIADPV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPV 252          
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.814e-27
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  419 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVRLLSLGRAN*EPLR-HIADPV 718
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV+ +  G+   E L  H+ADPV
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 101          
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.814e-27
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  419 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVRLLSLGRAN*EPLR-HIADPV 718
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV+ +  G+   E L  H+ADPV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.814e-27
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  419 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVRLLSLGRAN*EPLR-HIADPV 718
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV+ +  G+   E L  H+ADPV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.279e-27
Identity = 65/109 (59.63%), Postives = 76/109 (69.72%), Query Frame = 2
Query:  398 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVRLLSLGRAN*EPLR-HIADPV 718
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNGRLAMFSMFGFFV+ +  G+   E L  H+ADPV
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 109          
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.998e-22
Identity = 77/202 (38.12%), Postives = 102/202 (50.50%), Query Frame = 2
Query:  167 PSYLTGEFPGDYGWDTAGLSADPETFAKNREF*VIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVRLLS-LGRAN*EPL-RHIADPVATMPG--LMPLTLFP 757
            PSYL G  PGD+G+D+ GL   P    + +E  +IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V+  + LG    E L  H+ADP     G  ++P  +FP
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPKGIFP 245          
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.314e-21
Identity = 81/232 (34.91%), Postives = 111/232 (47.84%), Query Frame = 2
Query:   29 PMSLSARLVLPKKSRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREF*VIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVRLLSL-GRAN*EPL-RHIADP 715
            P S S R  LP  +  T    V  + +  W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E  + H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK+KE+KNGRLAM +  GF V+  +  G    E L  H+ADP
Sbjct:   21 PSSRSGRSGLPFCAYATTSGRVTMSAE--WF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADP 228          
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.786e-20
Identity = 69/205 (33.66%), Postives = 96/205 (46.83%), Query Frame = 2
Query:  125 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREF*VIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVRLLSLGRAN*EPL-RHIADP 715
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N +  ++HSRWAMLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++ G + + +  G    + L  H+ADP
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY702976 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.251e-20
Identity = 67/205 (32.68%), Postives = 98/205 (47.80%), Query Frame = 2
Query:  125 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREF*VIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVRLLSLGRAN*EPL-RHIADP 715
            PDRP +        P +L G  PGD+G+D  GL++DPE+   N++  ++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++ G + + +  G    + L  H+ADP
Sbjct:   63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
The following BLAST results are available for this feature:
BLAST of EY702976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB2F_SOLLC1.064e-2764.36Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.064e-2764.36Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.814e-2763.37Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.814e-2763.37Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.814e-2763.37Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA5.279e-2759.63Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB11_SOLLC2.998e-2238.12Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU3.314e-2134.91Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_PETHY4.786e-2033.66Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC6.251e-2032.68Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-D09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702976 ID=EY702976; Name=EY702976; organism=Citrus sinensis; type=EST; length=861bp
TCCCACAGGCGGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGT
TGGTTTTGCCGAAAAAGAGCCGTATCACCATGAGGAGGACTGTCAAATCC
GCTCCCCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACC
ATTCTCTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACT
ATGGCTGGGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAG
AACCGTGAGTTTTAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCT
TGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCG
AAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTCTGAAGGTGGCCTT
GACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTAT
CTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGTTGAAGGATACAGAATTG
GTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCT
TTTGACCCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAA
GGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGAT
TCTTTGTCAGGCTATTGTCACTGGGAAGGGCCAATTGAGAACCTCTACGA
CACATTGCTGATCCTGTGGCCACAATGCCTGGGCTTATGCCACTAACTTT
GTTCCCGGAAGTAAAGAACTCATGACTTGATGGTGTCTTTTTCAGCTGTA
ACATATTCTATGTATCCTATGTGCTTTTTGTGGAAACTCTGGCATGGACT
TATTAGAGCTC
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