EY702963

Overview
NameEY702963
Unique NameEY702963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_YEAST (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Saccharomyces cerevisiae GN=GCV2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.565e-14
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  586 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYNTHXPPVILRNI 873
            +P DTFARRH   +P D  KM + +G  +L++ I+  VP +I +   +K     +G  E +M++H++K+A+ N    K+FIG GYY T  PPVI RN+
Sbjct:   62 RPLDTFARRHLGPSPSDVKKMLKTMGYSDLNAFIEELVPPNILKRRPLKLEAPSKGFCEQEMLQHLEKIANKNHYKVKNFIGKGYYGTILPPVIQRNL 159          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.632e-13
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  583 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            L+    F  RH   TP D  KM  L+G  +L  LI+A +P  IR+   +     EGL+E+  ++ ++ LA  N+V++S+IGMGYYN   P VI RNI  N
Sbjct:   13 LETDAEFVARHIGITPSDLPKMLSLLGYGSLKELINAVIPPEIRLQ--RPLALSEGLSETAALQKLRTLAQQNQVWRSYIGMGYYNCITPSVIQRNILEN 110          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_SACD2 (Glycine dehydrogenase [decarboxylating] OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.632e-13
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  559 TRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            + G S++ L  S  F  RH     +    M + +GLD++D LID TVP SIR +  +       + E Q +  ++ +A  N+ +KS+IGMGY+ T+ PPVILRN+  N
Sbjct:    2 SHGTSLDELFNSRDFIGRHIGPNADQTRAMLDAMGLDSIDQLIDLTVPASIRGEETR--ALAAPVNEQQALAELKNIAGNNQRFKSYIGMGYHPTYVPPVILRNVLEN 107          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_CHICK (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Gallus gallus GN=GLDC PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.632e-13
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  541 YGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            +G G   R I  + L   D F RRH      ++ +M   VG+ +++ L+D T+P SIR+   +  + D+ + E++++E +  +AS NK+++S+IGMGYYN   P  I RN+  N
Sbjct:   34 WGGGEAARCIE-QLLPRHDDFCRRHIGPREREKREMLSAVGVQSVEELMDKTIPASIRL--RRPLRMDDHVVENEILETLYNIASKNKIWRSYIGMGYYNCSVPQPIARNLLEN 144          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_VARPS (Glycine dehydrogenase [decarboxylating] OS=Variovorax paradoxus (strain S110) GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.783e-13
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  571 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRNQLGHSVHS 906
            S++ L+ ++ F  RH      D+A+M  ++G +    LID  VP +IR    K  +     TE+  +  ++ +A+ NKV++SFIG GYY TH P VILRN+  N   ++ ++
Sbjct:    8 SLQQLENAEEFLARHIGIDAADEARMLPVIGSETRAELIDGIVPAAIR--RAKPMRLPAPATEADALAELKAIAAKNKVFRSFIGQGYYGTHTPGVILRNVLENPAWYTAYT 117          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_SYNY3 (Glycine dehydrogenase [decarboxylating] OS=Synechocystis sp. (strain PCC 6803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.783e-13
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  577 EALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRN 882
            E L P+D+F  RH      +Q +M + +G D L  LID  VP +IR    +  +     +E   I  ++ +AS N+V++S+IGMGYY+T  PPVI RNI  N
Sbjct:   25 EKLAPADSFLDRHLGPGETEQRQMLQTLGFDTLGDLIDQAVPPAIRFP--RSLQLPASQSEYGAIAQLKSIASKNQVFRSYIGMGYYDTITPPVIQRNILEN 124          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_HAHCH (Glycine dehydrogenase [decarboxylating] OS=Hahella chejuensis (strain KCTC 2396) GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.783e-13
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  553 SQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRNQLGHSVHS 906
            S TR    E L+  D F  RH      ++  M   +G+ ++++LI  TVP++IRI   +  + D   TE+Q +  ++  A  NKV+K++IGMGYYNT  P VILRN+  N   ++ ++
Sbjct:    2 SDTRETLAE-LEQRDAFIGRHIGPDEAEKTAMLNALGVADMETLISKTVPETIRIK--EGLELDGPCTEAQALAELKAFAERNKVFKTYIGMGYYNTLTPTVILRNVLENPAWYTAYT 116          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_BARHE (Glycine dehydrogenase [decarboxylating] OS=Bartonella henselae GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.783e-13
Identity = 34/102 (33.33%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  601 FARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRNQLGHSVHS 906
            F  RH    P+++ KM ++V +D++D+L+   +P SI +   +     + ++E Q +E + K+   N ++KSFIG GY+ T+ PPVILRN++ N   ++ ++
Sbjct:    6 FFSRHIGLRPDEKQKMLDIVAVDSIDTLVSQALPHSIHLG--RPLNLPKAVSEGQALEELSKMMERNYLHKSFIGQGYHGTYVPPVILRNLFENPAWYTAYT 105          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_XANCP (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas campestris pv. campestris GN=gcvP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  571 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRNQLGHSVHS 906
            S+  L+    F  RH      + A+M  +VG D+LD++ DA VP +I+  S       + +TE + +  ++ +AS N+V ++FIG GYY TH P VILRNI  N   ++ ++
Sbjct:    7 SLRDLEHHSAFVERHIGPNDAEIAQMLGVVGHDSLDAMTDAIVPSNIK--SPAALALPDAITEEEALARIRAIASKNQVQRTFIGQGYYGTHTPKVILRNILENPAWYTAYT 116          
BLAST of EY702963 vs. ExPASy Swiss-Prot
Match: GCSP_XANC8 (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=gcvP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  571 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHXPPVILRNIWRNQLGHSVHS 906
            S+  L+    F  RH      + A+M  +VG D+LD++ DA VP +I+  S       + +TE + +  ++ +AS N+V ++FIG GYY TH P VILRNI  N   ++ ++
Sbjct:    7 SLRDLEHHSAFVERHIGPNDAEIAQMLGVVGHDSLDAMTDAIVPSNIK--SPAALALPDAITEEEALARIRAIASKNQVQRTFIGQGYYGTHTPKVILRNILENPAWYTAYT 116          
The following BLAST results are available for this feature:
BLAST of EY702963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
GCSP_YEAST9.565e-1440.82Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_THEEB1.632e-1341.00Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_SACD21.632e-1337.96Glycine dehydrogenase [decarboxylating] OS=Sacchar... [more]
GCSP_CHICK1.632e-1335.09Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_VARPS2.783e-1334.82Glycine dehydrogenase [decarboxylating] OS=Variovo... [more]
GCSP_SYNY32.783e-1340.20Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_HAHCH2.783e-1336.44Glycine dehydrogenase [decarboxylating] OS=Hahella... [more]
GCSP_BARHE2.783e-1333.33Glycine dehydrogenase [decarboxylating] OS=Bartone... [more]
GCSP_XANCP3.635e-1335.71Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_XANC83.635e-1335.71Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-C07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702963 ID=EY702963; Name=EY702963; organism=Citrus sinensis; type=EST; length=906bp
CACGCGTCCGCGGACGCGTTGCGTAGATAGATAGTATTGTCCTCTCTTCT
CTCTCTCTCTCTCTATATATATTGTTTATATAGACAAAATTATCAGCATA
TGAATCATCAGTTTATTTATCACCAACCCCCTACCCCCACTGACTCTTAT
GTAACAAAAATATTTACTTTATTGAAAAACTACTCTTTTTATCTTCTCAA
CAACCCCATTTGCCTTGCTTTGCCTTGCTTCTTGTGAAGTTATTTCCTTT
TTTGAAGTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTC
ACTTCATTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAA
ACGCCTGGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAA
AATCATCAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCT
TCATTGTCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTT
GTTGCAATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCG
GGTCACAGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACT
TTTGCTCGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTC
TGAGTTAGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGC
CTAAATCTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGG
TTAACCGAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAA
TAAGGTTTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGNTC
CCCCTGTGATTTTGAGGAACATATGGAGAAATCAGCTTGGTCACTCAGTA
CACTCA
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