EY702946

Overview
NameEY702946
Unique NameEY702946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8408 contig Csv1_Contig8408:25..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 1.159e-59
Identity = 117/192 (60.94%), Postives = 145/192 (75.52%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +S+ENV+ KW PE+ H+AP VPIILVGTKLD+R+DK  Q  +      PIS  QG    K I A  Y+ECS+ TQ+ +K VFD AIR V+ +    +K+ S  GC+IL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFENVNGKWHPEICHHAPNVPIILVGTKLDMREDKETQDRLKEKKLYPISYEQGLAKMKEINAVKYLECSALTQKGLKTVFDEAIRAVI-NPPLSKKKKSSGGCNIL 194          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.977e-59
Identity = 115/192 (59.90%), Postives = 144/192 (75.00%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S AS+ENV+ KW PE+ H+AP VPIILVGTKLD+R+D+  Q  +      P+S  QG    K I A  Y+ECS+ TQ+ +K VFD AIR V+    + +K  S KGC I+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPEICHHAPNVPIILVGTKLDMREDRDTQDRLKEKKLYPVSYEQGLSKMKEINAVKYLECSALTQKGLKTVFDEAIRSVINPTLK-KKPKSSKGCIIM 194          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC2_HUMAN (Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.405e-59
Identity = 112/174 (64.37%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 737
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.405e-59
Identity = 112/174 (64.37%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 737
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC1C_DICDI (Rho-related protein rac1C OS=Dictyostelium discoideum GN=rac1C PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 4.405e-59
Identity = 117/192 (60.94%), Postives = 143/192 (74.48%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +SYENVS KW PE+ H+AP VPIILVGTK+D+R+DK  Q  +      P+S  QG    K I A  Y+ECS+ TQ+ +K VFD AIR V+    +  K  S  GC+IL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSYENVSGKWGPEVFHHAPNVPIILVGTKMDMREDKETQDRLKEKKLYPVSYEQGLLKMKEINAFKYLECSALTQKGLKTVFDEAIRSVINPPVKKSK--SKSGCNIL 193          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.753e-59
Identity = 112/174 (64.37%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 737
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC3_MOUSE (Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus GN=Rac3 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.814e-59
Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 737
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK     +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC3_HUMAN (Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens GN=RAC3 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.814e-59
Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 737
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK     +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.674e-58
Identity = 110/174 (63.22%), Postives = 133/174 (76.44%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 737
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRSVL 177          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 8.308e-58
Identity = 109/174 (62.64%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 737
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV   W P+++H+ P  PIIL+GTKLDLRDDK+    +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177          
The following BLAST results are available for this feature:
BLAST of EY702946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1A_DICDI1.159e-5960.94Rho-related protein rac1A OS=Dictyostelium discoid... [more]
RAC1B_DICDI1.977e-5959.90Rho-related protein rac1B OS=Dictyostelium discoid... [more]
RAC2_HUMAN4.405e-5964.37Ras-related C3 botulinum toxin substrate 2 OS=Homo... [more]
RAC2_BOVIN4.405e-5964.37Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC1C_DICDI4.405e-5960.94Rho-related protein rac1C OS=Dictyostelium discoid... [more]
RAC2_MOUSE5.753e-5964.37Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC3_MOUSE9.814e-5963.22Ras-related C3 botulinum toxin substrate 3 OS=Mus ... [more]
RAC3_HUMAN9.814e-5963.22Ras-related C3 botulinum toxin substrate 3 OS=Homo... [more]
RAC1_DROME1.674e-5863.22Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RAC2_CAVPO8.308e-5862.64Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-A10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702946 ID=EY702946; Name=EY702946; organism=Citrus sinensis; type=EST; length=912bp
TTCGTCAACCCACGCGTCCGATTGGTTCGTTCCACGAACGCTTCAACGGC
ATAATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCG
ATCGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCT
CTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAATA
AAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGC
TGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTA
CGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTC
AATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGA
TTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTC
TTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAG
TGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGT
TGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGATCATC
CAGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTG
ATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGT
GAAGGCAGTATTTGATGCAGCCATCAGAGTTGTCCTCCAACACCNAAGAC
GAGGAAGAAAAGAATAAAGCCCAAAGGGCTGCTCTATATTGTGATTGAAA
TTAGGTGTAAAGAGATTATGACCCTCTGTCCTTTCTCAATTCTCCCCTCA
TCTTCTTTCTATGCTCTTGAAGAATCTCAATTGACAACTGTTGAGATCTC
TCTGTGATCATC
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