EY702946

Overview
NameEY702946
Unique NameEY702946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 46/120 (38.33%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 581
            K V VGDG VGKT  +  + +  F   Y+ T   N S  ++      +   +WDTAGQE    LR   Y GAD  I+ F + S+ +Y+N+  KW  +L      VPI+LVG K+D +D K
Sbjct:   13 KLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNI-PKWHKDLTRICENVPIVLVGNKVDSKDSK 131          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 50/180 (27.78%), Postives = 94/180 (52.22%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRG 755
            +KC+  G   VGK+ LL+ +    F  +   T+   F   +++++ S + L +WDTAGQE +  +    YRGA + +L + +  + S++ +S  W+ E++   +P + I L+G K D +D +           I+T +G +  K      + E S+K  ++V++VFD   + VL   ++G
Sbjct:    6 LKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLS-GWMDEVRQMSSPNIVIALIGNKCDCKDKR----------VITTEEGAKNAK-ENDILFFETSAKDYESVESVFDGVSKKVLSLIKQG 173          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 57/168 (33.93%), Postives = 88/168 (52.38%), Query Frame = 3
Query:  216 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 713
            R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V ++ + + +  S++  S KWI +++      V I+LVG K DL D +Q  I+          +GE+  K +    +IE S+KT  NVK +F
Sbjct:   12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADKRQITIE----------EGEQRAKELSV-MFIETSAKTGYNVKQLF 167          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 57/168 (33.93%), Postives = 88/168 (52.38%), Query Frame = 3
Query:  216 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 713
            R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V ++ + + +  S++  S KWI +++      V I+LVG K DL D +Q  I+          +GE+  K +    +IE S+KT  NVK +F
Sbjct:   12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADKRQITIE----------EGEQRAKELSV-MFIETSAKTGYNVKQLF 167          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 57/168 (33.93%), Postives = 88/168 (52.38%), Query Frame = 3
Query:  216 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 713
            R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAGQE +  L P   R + V ++ + + +  S++  S KWI +++      V I+LVG K DL D +Q  I+          +GE+  K +    +IE S+KT  NVK +F
Sbjct:   12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADKRQITIE----------EGEQRAKELSV-MFIETSAKTGYNVKQLF 167          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 57/190 (30.00%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRR 752
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +           +   +  EL +  G P Y E S+    N+    +  + ++++   R
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISHAIEMLLDLIMKRMER 187          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 57/165 (34.55%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 713
            K V +GD   GK+ L+I +    F      T+   F S+ V VN +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + S  S    +KKW+ EL K   P + + L G K DL D ++            TA+   L        ++E S+KT  NV  +F
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLAR-AKKWVQELQKQGNPNMVMALAGNKADLEDKRKV-----------TAEEARLYAEENGLFFMETSAKTATNVNDIF 164          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 52/172 (30.23%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 734
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +++           + T +G+ L + +G   + E S+K   +V+  F+  +  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 183          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 61/167 (36.53%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGST-VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA-PAYI-ECSSKTQQNVKAVF 713
            +K V +G  +VGKTC++  YTS  F   +  T+   FS+  VV G T V LG+WDTAG E Y  +    YR A+  I+ + L ++ S+E V+  W  EL    P + I +VGTKLDL               I     EE+++      A+I E SS+T +NV  +F
Sbjct:    8 LKVVLLGYASVGKTCIVTRYTSGQFGDTHT-TIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVT-FWAEELTQNEPEIEIYIVGTKLDLIQQGD----------IKAVPEEEVKQTARRYKAHIFETSSRTGENVSLLF 162          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.989e-15
Identity = 53/174 (30.46%), Postives = 88/174 (50.57%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 740
            K V +GD  VGK+ LL+ +T N F  +   T+   F+  N+V++   +   +WDTAGQE Y  +    YRGA   ++ + +  ++S++NV  +W+ EL+ +A   + I+LVG K DL         H  AV    AQ       +   ++IE S+    NV+  F   +  + +
Sbjct:   12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVG-RWLKELREHADSNIVIMLVGNKTDLL--------HLRAVSTEEAQAFAAENNL---SFIETSAMDASNVEEAFQTVLTEIFR 173          
The following BLAST results are available for this feature:
BLAST of EY702946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_TETPY1.753e-1538.33GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RABQ_DICDI1.753e-1527.78Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB6B_MOUSE1.753e-1533.93Ras-related protein Rab-6B OS=Mus musculus GN=Rab6... [more]
RAB6B_HUMAN1.753e-1533.93Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
RAB6B_BOVIN1.753e-1533.93Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
RB27A_MOUSE2.289e-1530.00Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RAB5_TOBAC2.289e-1534.55Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB3B_HUMAN2.289e-1530.23Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB24_DICDI2.289e-1536.53Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
YPT3_SCHPO2.989e-1530.46GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-A10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702946 ID=EY702946; Name=EY702946; organism=Citrus sinensis; type=EST; length=912bp
TTCGTCAACCCACGCGTCCGATTGGTTCGTTCCACGAACGCTTCAACGGC
ATAATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCG
ATCGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCT
CTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAATA
AAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGC
TGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTA
CGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTC
AATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGA
TTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTC
TTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAG
TGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGT
TGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGATCATC
CAGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTG
ATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGT
GAAGGCAGTATTTGATGCAGCCATCAGAGTTGTCCTCCAACACCNAAGAC
GAGGAAGAAAAGAATAAAGCCCAAAGGGCTGCTCTATATTGTGATTGAAA
TTAGGTGTAAAGAGATTATGACCCTCTGTCCTTTCTCAATTCTCCCCTCA
TCTTCTTTCTATGCTCTTGAAGAATCTCAATTGACAACTGTTGAGATCTC
TCTGTGATCATC
back to top