EY702946

Overview
NameEY702946
Unique NameEY702946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.989e-15
Identity = 52/166 (31.33%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 713
            ++ + +G   VGKT L+  +T +TF      TV  +F    V + G  + L +WDTAGQE +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   D++          IS  QGE+  + I    + E S+K   NV  +F
Sbjct:   42 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 196          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 50/164 (30.49%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  228 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 716
            CV +GDG VGKT + I + SN F   Y PT+ D +    +++     L + DTAGQ++ N +R    +  + FIL +S+ S++S++ + + ++ ++K   +  VPII++  K DL D++Q          ++  +GE      G  +++E S+K + N+  VF+
Sbjct:   18 CV-MGDGGVGKTSITIQFISNHFVNCYDPTIEDLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQI-QSFLDQIKFLKSEKVPIIMIANKSDLDDERQ----------VTYQEGENFANRFGM-SFMEVSAKYKLNIDEVFN 168          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAP2B_RAT (Ras-related protein Rap-2b OS=Rattus norvegicus GN=Rap2b PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 52/173 (30.06%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  216 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 728
            R  K V +G G VGK+ L + + + +F   Y PT+ D +   + V+ S   L + DTAG E +  +R L  +    FIL +SL+++ S++++   +  I  +K Y   VP+ILVG K+DL  +++          +S  +G+ L +    P ++E S+K + +V  +F   +R
Sbjct:    2 REYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-ERVPMILVGNKVDLEGERE----------VSYGEGKALAEEWSCP-FMETSAKNKASVDELFAEIVR 162          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAP2B_MOUSE (Ras-related protein Rap-2b OS=Mus musculus GN=Rap2b PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 52/173 (30.06%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  216 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 728
            R  K V +G G VGK+ L + + + +F   Y PT+ D +   + V+ S   L + DTAG E +  +R L  +    FIL +SL+++ S++++   +  I  +K Y   VP+ILVG K+DL  +++          +S  +G+ L +    P ++E S+K + +V  +F   +R
Sbjct:    2 REYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-ERVPMILVGNKVDLEGERE----------VSYGEGKALAEEWSCP-FMETSAKNKASVDELFAEIVR 162          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 52/173 (30.06%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  216 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 728
            R  K V +G G VGK+ L + + + +F   Y PT+ D +   + V+ S   L + DTAG E +  +R L  +    FIL +SL+++ S++++   +  I  +K Y   VP+ILVG K+DL  +++          +S  +G+ L +    P ++E S+K + +V  +F   +R
Sbjct:    2 REYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-ERVPMILVGNKVDLEGERE----------VSYGEGKALAEEWSCP-FMETSAKNKASVDELFAEIVR 162          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 52/173 (30.06%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  216 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 728
            R  K V +G G VGK+ L + + + +F   Y PT+ D +   + V+ S   L + DTAG E +  +R L  +    FIL +SL+++ S++++   +  I  +K Y   VP+ILVG K+DL  +++          +S  +G+ L +    P ++E S+K + +V  +F   +R
Sbjct:    2 REYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-ERVPMILVGNKVDLEGERE----------VSYGEGKALAEEWSCP-FMETSAKNKASVDELFAEIVR 162          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB5B_DICDI (Putative ras-related protein Rab-5B OS=Dictyostelium discoideum GN=rab5B PE=5 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 56/181 (30.94%), Postives = 92/181 (50.83%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI---GAPAYIECSSKTQQNVKAVFDAAIRVVLQHXR 749
            K V +G+   GKTC+      N F PTD   T+   F   ++VV+   + L +WDTAGQE Y  L P+ YRGA   ++ + +  K ++E + K+W+ EL KH +P + + L G K+DL              P    Q +E+ + I   G   + E S+ + QN+  +F    R ++++ +
Sbjct:   51 KLVLLGEMNTGKTCISSRLVRNEFGPTD--STIGAAFLVKSMVVDNINIKLEIWDTAGQERYRSLTPMYYRGAAAAVVVYDITKKNTFETL-KRWVSELQKHASPNLILALAGNKVDL--------------PNREVQVDEVNRYISELGNAIFFETSAASGQNINELFTEICRRLIENYK 214          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 52/172 (30.23%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 734
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 183          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 52/172 (30.23%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 734
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 183          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 53/177 (29.94%), Postives = 93/177 (52.54%), Query Frame = 3
Query:  210 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 734
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ ELK + P  + + + G K DL D ++        VP+  A  +E  + IGA   +E S+K   N++ +F    R +
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-LVVETSAKNAINIEELFQGISRQI 166          
The following BLAST results are available for this feature:
BLAST of EY702946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB12_MOUSE2.989e-1531.33Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
RASU_DICDI3.904e-1530.49Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RAP2B_RAT3.904e-1530.06Ras-related protein Rap-2b OS=Rattus norvegicus GN... [more]
RAP2B_MOUSE3.904e-1530.06Ras-related protein Rap-2b OS=Mus musculus GN=Rap2... [more]
RAP2B_HUMAN3.904e-1530.06Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG3.904e-1530.06Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]
RAB5B_DICDI3.904e-1530.94Putative ras-related protein Rab-5B OS=Dictyosteli... [more]
RAB3B_MOUSE3.904e-1530.23Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU3.904e-1530.23Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB31_RAT3.904e-1529.94Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-A10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702946 ID=EY702946; Name=EY702946; organism=Citrus sinensis; type=EST; length=912bp
TTCGTCAACCCACGCGTCCGATTGGTTCGTTCCACGAACGCTTCAACGGC
ATAATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCG
ATCGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCT
CTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAATA
AAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGC
TGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTA
CGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTC
AATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGA
TTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTC
TTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAG
TGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGT
TGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGATCATC
CAGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTG
ATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGT
GAAGGCAGTATTTGATGCAGCCATCAGAGTTGTCCTCCAACACCNAAGAC
GAGGAAGAAAAGAATAAAGCCCAAAGGGCTGCTCTATATTGTGATTGAAA
TTAGGTGTAAAGAGATTATGACCCTCTGTCCTTTCTCAATTCTCCCCTCA
TCTTCTTTCTATGCTCTTGAAGAATCTCAATTGACAACTGTTGAGATCTC
TCTGTGATCATC
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