EY702946

Overview
NameEY702946
Unique NameEY702946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8408 contig Csv1_Contig8408:25..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 52/185 (28.11%), Postives = 90/185 (48.65%), Query Frame = 3
Query:  213 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK-KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE 764
            SR  K V +G G VGK+ + + + S+ FP D+ PT+ D +   + ++    NL + DTAGQ ++  +R    R  + FI+ +S+  + S+  V + K +          P++LVG K DL+  +Q          ++  +G  L +    P + E S+  +  +  VF A +R +    RR  KE
Sbjct:   19 SREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQ----------VTKEEGLALAREFSCP-FFETSAAYRYYIDDVFHALVREI----RRKEKE 188          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 59/190 (31.05%), Postives = 89/190 (46.84%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRR 752
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y     I+L G K DL D +         V    A+G  L +  G P Y E S+    N+    +  + ++++   R
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR--------VVKEEDARG--LAEKYGIP-YFETSAANGTNISQAIEMLLDLIMKRMER 187          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RASEF_XENTR (RAS and EF-hand domain-containing protein OS=Xenopus tropicalis GN=rasef PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 3
Query:  210 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH-YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN-VKAVFDAAIRV 731
            A +  K V  GD AVGK+  L+    N F  +   T+  +F    +VV+G    L LWDTAGQE +  +    +R AD  +L + +  + S+ NV ++WI  ++   +  +PI++VG K DLR      +   G + +ST  GE+L +  GA  + E S+K   N V+AV   A  V
Sbjct:  519 AEKAYKIVLAGDAAVGKSSFLMRLCKNEFRGNTSATLGVDFQMKTLVVDGEPTILQLWDTAGQERFRSIAKSYFRRADGVLLLYDVTCEKSFLNV-REWIDMIEDATSEAIPIMMVGNKADLRQ----LMAEQGHICVSTNYGEKLSRTYGA-LFCETSAKEGSNIVEAVLHLAREV 689          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 581
            K V VGDG VGKT  +  + +  F   Y+ T   N S  V+      +   +WDTAGQE    LR   Y GA+  I+ F + S+ +Y+N+  KW  +L      +PI+LVG K+D +D K
Sbjct:   13 KLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNI-PKWHKDLTRICENIPIVLVGNKVDSKDRK 131          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 719
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 719
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 719
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 719
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 719
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 719
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + +        AV    AQ       +    ++E S+KT  NV  +F A
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 176          
The following BLAST results are available for this feature:
BLAST of EY702946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIT1_HUMAN1.484e-1428.11GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RB27A_CANFA1.484e-1431.05Ras-related protein Rab-27A OS=Canis familiaris GN... [more]
RASEF_XENTR1.484e-1433.90RAS and EF-hand domain-containing protein OS=Xenop... [more]
RAN_TETTH1.484e-1437.50GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAB5A_PIG1.484e-1432.34Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE1.484e-1432.34Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA1.484e-1432.34Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN1.484e-1432.34Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA1.484e-1432.34Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN1.484e-1432.34Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-A10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702946 ID=EY702946; Name=EY702946; organism=Citrus sinensis; type=EST; length=912bp
TTCGTCAACCCACGCGTCCGATTGGTTCGTTCCACGAACGCTTCAACGGC
ATAATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCG
ATCGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCT
CTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAATA
AAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGC
TGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTA
CGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTC
AATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGA
TTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTC
TTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAG
TGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGT
TGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGATCATC
CAGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTG
ATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGT
GAAGGCAGTATTTGATGCAGCCATCAGAGTTGTCCTCCAACACCNAAGAC
GAGGAAGAAAAGAATAAAGCCCAAAGGGCTGCTCTATATTGTGATTGAAA
TTAGGTGTAAAGAGATTATGACCCTCTGTCCTTTCTCAATTCTCCCCTCA
TCTTCTTTCTATGCTCTTGAAGAATCTCAATTGACAACTGTTGAGATCTC
TCTGTGATCATC
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