EY702946

Overview
NameEY702946
Unique NameEY702946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8408 contig Csv1_Contig8408:25..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHO1_CANAL (GTP-binding protein RHO1 OS=Candida albicans GN=RHO1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.920e-46
Identity = 97/191 (50.79%), Postives = 130/191 (68.06%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            K V VGDGA GKTCLLI ++  TFP  YVPTVF+N+ A+V V+G  V L LWDTAGQEDY+RLRPLSY  ++V ++ FS+ S  S +NV +KWI E+ H+  GVPIILVG K DLRDD      +      P+ST++G+++ + IGA  Y+ECS+KT + V+ VF+AA R  L+   +  K+   K C +L
Sbjct:   11 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRKVELALWDTAGQEDYDRLRPLSYPDSNVILICFSVDSPDSLDNVLEKWISEVLHFCQGVPIILVGCKSDLRDDPHTIEALRQQQQQPVSTSEGQQVAQRIGAADYLECSAKTGRGVREVFEAATRASLRVKEKKEKK---KKCVVL 198          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHOV_RAT (Rho-related GTP-binding protein RhoV OS=Rattus norvegicus GN=Rhov PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.277e-46
Identity = 93/195 (47.69%), Postives = 130/195 (66.67%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            IKCV VGDGAVGK+ L++SYT N +P+ Y PT  D FS  V+V+G+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI   ++H  R  K+ + KG   L
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPSRYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPEPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKGVRTL 224          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHOV_MOUSE (Rho-related GTP-binding protein RhoV OS=Mus musculus GN=Rhov PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.586e-46
Identity = 93/195 (47.69%), Postives = 129/195 (66.15%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            IKCV VGDGAVGK+ L++SYT N +P  Y PT  D FS  V+V+G+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI   ++H  R  K+ + KG   L
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKGVRTL 224          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHOV_HUMAN (Rho-related GTP-binding protein RhoV OS=Homo sapiens GN=RHOV PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.586e-46
Identity = 93/195 (47.69%), Postives = 129/195 (66.15%), Query Frame = 3
Query:  222 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            IKCV VGDGAVGK+ L++SYT N +P  Y PT  D FS  V+V+G+ V + LWDTAGQED++RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI   ++H  R  K+ + KG   L
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKGVRTL 224          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHOC_PONAB (Rho-related GTP-binding protein RhoC OS=Pongo abelii GN=RHOC PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.586e-46
Identity = 94/191 (49.21%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+  +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A R  LQ  +  R+    +GC IL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRR----RGCPIL 193          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHOC_MOUSE (Rho-related GTP-binding protein RhoC OS=Mus musculus GN=Rhoc PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 5.586e-46
Identity = 94/191 (49.21%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+  +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A R  LQ  +  R+    +GC IL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRR----RGCPIL 193          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHOC_HUMAN (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.586e-46
Identity = 94/191 (49.21%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+  +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A R  LQ  +  R+    +GC IL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRR----RGCPIL 193          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.586e-46
Identity = 94/191 (49.21%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+  +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A R  LQ  +  R+    +GC IL
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRR----RGCPIL 193          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHO1_CAEEL (Ras-like GTP-binding protein rhoA OS=Caenorhabditis elegans GN=rho-1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.586e-46
Identity = 90/182 (49.45%), Postives = 122/182 (67.03%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE 764
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR D Q    +      P+   QG  + + IGA AY+ECS+KT+  ++ VF+ A +  LQ  ++ + +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRDLRSDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAYLECSAKTKDGIREVFEKATQAALQQKKKKKSK 188          
BLAST of EY702946 vs. ExPASy Swiss-Prot
Match: RHOC_CHICK (Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.244e-45
Identity = 94/191 (49.21%), Postives = 128/191 (67.02%), Query Frame = 3
Query:  225 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQHXRRGRKE*SPKGCSIL 791
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D+  +  +      P+   +G ++   I A  Y+ECS+KT++ V+ VF+ A R  LQ  R+ +K    +GC +L
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFEMATRAGLQ-VRKNKKR---RGCPLL 193          
The following BLAST results are available for this feature:
BLAST of EY702946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHO1_CANAL1.920e-4650.79GTP-binding protein RHO1 OS=Candida albicans GN=RH... [more]
RHOV_RAT4.277e-4647.69Rho-related GTP-binding protein RhoV OS=Rattus nor... [more]
RHOV_MOUSE5.586e-4647.69Rho-related GTP-binding protein RhoV OS=Mus muscul... [more]
RHOV_HUMAN5.586e-4647.69Rho-related GTP-binding protein RhoV OS=Homo sapie... [more]
RHOC_PONAB5.586e-4649.21Rho-related GTP-binding protein RhoC OS=Pongo abel... [more]
RHOC_MOUSE5.586e-4649.21Rho-related GTP-binding protein RhoC OS=Mus muscul... [more]
RHOC_HUMAN5.586e-4649.21Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
RHOC_BOVIN5.586e-4649.21Rho-related GTP-binding protein RhoC OS=Bos taurus... [more]
RHO1_CAEEL5.586e-4649.45Ras-like GTP-binding protein rhoA OS=Caenorhabditi... [more]
RHOC_CHICK1.244e-4549.21Rho-related GTP-binding protein RhoC OS=Gallus gal... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-A10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702946 ID=EY702946; Name=EY702946; organism=Citrus sinensis; type=EST; length=912bp
TTCGTCAACCCACGCGTCCGATTGGTTCGTTCCACGAACGCTTCAACGGC
ATAATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCG
ATCGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCT
CTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAATA
AAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGC
TGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTA
CGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTC
AATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGA
TTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTC
TTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAG
TGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGT
TGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGATCATC
CAGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTG
ATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGT
GAAGGCAGTATTTGATGCAGCCATCAGAGTTGTCCTCCAACACCNAAGAC
GAGGAAGAAAAGAATAAAGCCCAAAGGGCTGCTCTATATTGTGATTGAAA
TTAGGTGTAAAGAGATTATGACCCTCTGTCCTTTCTCAATTCTCCCCTCA
TCTTCTTTCTATGCTCTTGAAGAATCTCAATTGACAACTGTTGAGATCTC
TCTGTGATCATC
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