EY650134
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: CNOT6_MOUSE (CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11 Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = 3 Query: 249 RRKPFDEPSPDVLRHWIDA-DPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILNV-MEKVGYAGCYKRRT---------GYNVDGCAMFLKADKVRVLEQTSIEF 647 +R ++P P R WI +P+ P FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DII +QEV ++Y+ V +++ GY G + ++ +VDGCA+F K +K ++++ ++EF Sbjct: 162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEF 302
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: CNOT6_XENLA (CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11 Identity = 47/141 (33.33%), Postives = 77/141 (54.61%), Query Frame = 3 Query: 264 DEPSPDVLRHWIDA-DPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILNV-MEKVGYAGCYKRRT---------GYNVDGCAMFLKADKVRVLEQTSIEF 647 ++P P R WI +P+ P FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DII +QEV ++Y+ V +++ GY G + ++ +VDGCA+F K +K ++++ ++EF Sbjct: 162 EQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEF 297
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: CNOT6_HUMAN (CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11 Identity = 47/146 (32.19%), Postives = 79/146 (54.11%), Query Frame = 3 Query: 249 RRKPFDEPSPDVLRHWIDA-DPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILNV-MEKVGYAGCYKRRT---------GYNVDGCAMFLKADKVRVLEQTSIEF 647 +R ++P P R WI +P+ P FSV+ YN+L DK A R LY + W+ RK+ I QE++ N DI+ +QEV ++Y+ V +++ GY G + ++ +VDGCA+F K +K ++++ ++EF Sbjct: 162 KRITTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEF 302
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: ANGE2_HUMAN (Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 3.318e-11 Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 3 Query: 336 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKVGYAGCYKRRTGYNVDGCAMFLKADKVRVLEQTSIEF 647 FSV+SYNIL + LY++ R + W+ R I +E+ + D++C+QEV D Y +I +E +GY YK RTG DGCA+ K K +L +EF Sbjct: 167 FSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGAEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEF 273 HSP 2 Score: 23.0978 bits (48), Expect = 3.318e-11 Identity = 13/50 (26.00%), Postives = 21/50 (42.00%), Query Frame = 2 Query: 743 HVLYYPNRGGGKISQFGXLSSRAXIXAE-------------EWGNIPGGP 853 H+LY P RG K++Q L + A ++ ++PG P Sbjct: 310 HLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGSFCPIVMCGDFNSVPGSP 359
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: ANGE2_MOUSE (Protein angel homolog 2 OS=Mus musculus GN=Angel2 PE=2 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 4.306e-11 Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 3 Query: 336 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKVGYAGCYKRRTGYNVDGCAMFLKADKVRVLEQTSIEF 647 FSV+SYNIL + LY++ R + W+ R I +E+ + D++C+QEV D Y +I +E +GY YK +TG DGCA+ K + +L +EF Sbjct: 167 FSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSRFSLLSVNPVEF 273 HSP 2 Score: 25.0238 bits (53), Expect = 4.306e-11 Identity = 14/50 (28.00%), Postives = 22/50 (44.00%), Query Frame = 2 Query: 743 HVLYYPNRGGGKISQFGXL-------------SSRAXIXAEEWGNIPGGP 853 H+LY P RG K++Q L SS + ++ ++PG P Sbjct: 310 HLLYNPRRGDIKLTQLAMLLAEIANVTHRKDGSSCPIVMCGDFNSVPGSP 359
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: NOCT_RAT (Nocturnin (Fragment) OS=Rattus norvegicus GN=Ccrn4l PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11 Identity = 40/132 (30.30%), Postives = 64/132 (48.48%), Query Frame = 3 Query: 276 PDVLRHWIDADPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKVGYAG---------CYKRRTGYNVDGCAMFLKADKVRVLEQTSI 641 P R ++D + S V+ +NIL + +D + E +KW RK LI +E++ PDI+C+QEVD YFD L ++ ++GY G C DGCA+F + +++ T+I Sbjct: 47 PRYQRDFVDLRTDCSSSHPPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTLQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQSRFKLINSTNI 177
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11 Identity = 44/146 (30.14%), Postives = 76/146 (52.05%), Query Frame = 3 Query: 240 NPLRRKPFDEPSPDVLRHWIDADPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR-YFD--ILNVMEKVGYAGCYKRRTG-------YNVDGCAMFLKADKVRVLEQTSIEF 647 +P R+ DV H +D++ P+S F+V+SYNIL D + D+Y + W R++ + +E++ DI+C+QEV +F+ L ++K GY G +KR+T +DGCA F + D+ +++ +EF Sbjct: 218 SPSPRRLISISGTDVTGH-LDSNGRPLSMGT-FTVLSYNILSD--TYASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEF 359
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: ANGE2_DANRE (Protein angel homolog 2 OS=Danio rerio GN=angel2 PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 9.403e-11 Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 3 Query: 276 PDVLRHWID------ADPNPISPDER----FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKVGYAGCYKRRTGYNVDGCAMFLKADKVRVLEQTSIEF 647 P++ RHW D A P+ ++ FSV+SYNIL + LY++ + W R I +EL + DI+C+QEV D Y I +E +GY +KRRTG DGCA+ K ++ ++ +E+ Sbjct: 169 PELKRHWEDLSHLCKAAPSVNRGKQKWPFDFSVMSYNILSQDLLCDNTYLYRHCNPPVLDWRNRFPNIIKELEQYSADIMCLQEVQEDHYKQQIKPSLESLGYHCEFKRRTGLKPDGCAVIFKRERFSLVSCHPVEY 305 HSP 2 Score: 22.7126 bits (47), Expect = 9.403e-11 Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = 2 Query: 743 HVLYYPNRGGGKISQFGXL 799 H+LY P RG K++Q L Sbjct: 342 HLLYNPRRGDIKLAQLAML 360 The following BLAST results are available for this feature:
BLAST of EY650134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >EY650134 ID=EY650134; Name=EY650134; organism=Citrus sinensis; type=EST; length=860bpback to top |