EY650134

Overview
NameEY650134
Unique NameEY650134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: CNOT6_MOUSE (CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  249 RRKPFDEPSPDVLRHWIDA-DPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILNV-MEKVGYAGCYKRRT---------GYNVDGCAMFLKADKVRVLEQTSIEF 647
            +R   ++P P   R WI   +P+   P   FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DII +QEV  ++Y+    V +++ GY G +  ++           +VDGCA+F K +K  ++++ ++EF
Sbjct:  162 KRISTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEF 302          
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: CNOT6_XENLA (CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 47/141 (33.33%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  264 DEPSPDVLRHWIDA-DPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILNV-MEKVGYAGCYKRRT---------GYNVDGCAMFLKADKVRVLEQTSIEF 647
            ++P P   R WI   +P+   P   FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DII +QEV  ++Y+    V +++ GY G +  ++           +VDGCA+F K +K  ++++ ++EF
Sbjct:  162 EQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEF 297          
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: CNOT6_HUMAN (CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 47/146 (32.19%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  249 RRKPFDEPSPDVLRHWIDA-DPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILNV-MEKVGYAGCYKRRT---------GYNVDGCAMFLKADKVRVLEQTSIEF 647
            +R   ++P P   R WI   +P+   P   FSV+ YN+L DK A   R LY       + W+ RK+ I QE++  N DI+ +QEV  ++Y+    V +++ GY G +  ++           +VDGCA+F K +K  ++++ ++EF
Sbjct:  162 KRITTEQPPP---RSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT--RQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEF 302          
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: ANGE2_HUMAN (Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.318e-11
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 3
Query:  336 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKVGYAGCYKRRTGYNVDGCAMFLKADKVRVLEQTSIEF 647
            FSV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E +GY   YK RTG   DGCA+  K  K  +L    +EF
Sbjct:  167 FSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGAEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEF 273          

HSP 2 Score: 23.0978 bits (48), Expect = 3.318e-11
Identity = 13/50 (26.00%), Postives = 21/50 (42.00%), Query Frame = 2
Query:  743 HVLYYPNRGGGKISQFGXLSSRAXIXAE-------------EWGNIPGGP 853
            H+LY P RG  K++Q   L +     A              ++ ++PG P
Sbjct:  310 HLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGSFCPIVMCGDFNSVPGSP 359          
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: ANGE2_MOUSE (Protein angel homolog 2 OS=Mus musculus GN=Angel2 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.306e-11
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 3
Query:  336 FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKVGYAGCYKRRTGYNVDGCAMFLKADKVRVLEQTSIEF 647
            FSV+SYNIL       +  LY++ R   + W+ R   I +E+   + D++C+QEV  D Y  +I   +E +GY   YK +TG   DGCA+  K  +  +L    +EF
Sbjct:  167 FSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSRFSLLSVNPVEF 273          

HSP 2 Score: 25.0238 bits (53), Expect = 4.306e-11
Identity = 14/50 (28.00%), Postives = 22/50 (44.00%), Query Frame = 2
Query:  743 HVLYYPNRGGGKISQFGXL-------------SSRAXIXAEEWGNIPGGP 853
            H+LY P RG  K++Q   L             SS   +   ++ ++PG P
Sbjct:  310 HLLYNPRRGDIKLTQLAMLLAEIANVTHRKDGSSCPIVMCGDFNSVPGSP 359          
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: NOCT_RAT (Nocturnin (Fragment) OS=Rattus norvegicus GN=Ccrn4l PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 40/132 (30.30%), Postives = 64/132 (48.48%), Query Frame = 3
Query:  276 PDVLRHWIDADPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKVGYAG---------CYKRRTGYNVDGCAMFLKADKVRVLEQTSI 641
            P   R ++D   +  S      V+ +NIL      + +D +     E +KW  RK LI +E++   PDI+C+QEVD YFD L  ++ ++GY G         C         DGCA+F    + +++  T+I
Sbjct:   47 PRYQRDFVDLRTDCSSSHPPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTLQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQSRFKLINSTNI 177          
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 44/146 (30.14%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  240 NPLRRKPFDEPSPDVLRHWIDADPNPISPDERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR-YFD--ILNVMEKVGYAGCYKRRTG-------YNVDGCAMFLKADKVRVLEQTSIEF 647
            +P  R+       DV  H +D++  P+S    F+V+SYNIL D   +   D+Y       + W  R++ + +E++    DI+C+QEV   +F+   L  ++K GY G +KR+T          +DGCA F + D+   +++  +EF
Sbjct:  218 SPSPRRLISISGTDVTGH-LDSNGRPLSMGT-FTVLSYNILSD--TYASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEF 359          
BLAST of EY650134 vs. ExPASy Swiss-Prot
Match: ANGE2_DANRE (Protein angel homolog 2 OS=Danio rerio GN=angel2 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 9.403e-11
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  276 PDVLRHWID------ADPNPISPDER----FSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRY-FDILNVMEKVGYAGCYKRRTGYNVDGCAMFLKADKVRVLEQTSIEF 647
            P++ RHW D      A P+     ++    FSV+SYNIL       +  LY++     + W  R   I +EL   + DI+C+QEV  D Y   I   +E +GY   +KRRTG   DGCA+  K ++  ++    +E+
Sbjct:  169 PELKRHWEDLSHLCKAAPSVNRGKQKWPFDFSVMSYNILSQDLLCDNTYLYRHCNPPVLDWRNRFPNIIKELEQYSADIMCLQEVQEDHYKQQIKPSLESLGYHCEFKRRTGLKPDGCAVIFKRERFSLVSCHPVEY 305          

HSP 2 Score: 22.7126 bits (47), Expect = 9.403e-11
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = 2
Query:  743 HVLYYPNRGGGKISQFGXL 799
            H+LY P RG  K++Q   L
Sbjct:  342 HLLYNPRRGDIKLAQLAML 360          
The following BLAST results are available for this feature:
BLAST of EY650134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CNOT6_MOUSE1.823e-1132.88CCR4-NOT transcription complex subunit 6 OS=Mus mu... [more]
CNOT6_XENLA2.381e-1133.33CCR4-NOT transcription complex subunit 6 OS=Xenopu... [more]
CNOT6_HUMAN2.381e-1132.19CCR4-NOT transcription complex subunit 6 OS=Homo s... [more]
ANGE2_HUMAN3.318e-1137.38Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 ... [more]
ANGE2_MOUSE4.306e-1135.51Protein angel homolog 2 OS=Mus musculus GN=Angel2 ... [more]
NOCT_RAT6.927e-1130.30Nocturnin (Fragment) OS=Rattus norvegicus GN=Ccrn4... [more]
CCR4A_ARATH6.927e-1130.14Carbon catabolite repressor protein 4 homolog 1 OS... [more]
ANGE2_DANRE9.403e-1132.85Protein angel homolog 2 OS=Danio rerio GN=angel2 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-F04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650134 ID=EY650134; Name=EY650134; organism=Citrus sinensis; type=EST; length=860bp
GGTTACTTGTGGATCAATCAATGAGGGCCGAAGCCACTTCCTCCTCTTCT
TGGCTCGGCCGGATCCCACCAACGGCCACCTCCGCGCCGAGCGGCGGCTC
CGACAAGTTCCGGCACTTCATCTTCTTCTCCTCCTCCTGCTGCAAGACTA
CAAACACCATTTCCTGTGGCTCCAATGGTCCCACCACACATTCCTCATCA
TCATCGCCGTCAACTCGTTCGTACAGCCGTCGATGGTACAACCCTCTCCG
ACGTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCACTGGATCG
ACGCTGATCCTAATCCAATTTCACCTGACGAGAGATTCTCGGTCGTGTCA
TATAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATTTATATCA
AAATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGGTTAATAT
GCCAAGAGTTGATCGGATTGAACCCGGATATTATCTGTATGCAAGAGGTG
GACAGGTATTTTGATATTCTGAATGTTATGGAGAAAGTGGGATATGCTGG
TTGTTACAAGCGGCGCACTGGGTATAACGTCGATGGTTGTGCGATGTTTT
TGAAAGCTGATAAAGTTCGGGTATTAGAGCAAACAAGCATTGAATTTAAA
GGAGTTTGGCCCTCGTGAAAATGTGGCACAACTTTNCGCTTTTGGAGCAG
ATGCGCCACACAAAATCAAGAAGAGGACTGGGTGGGTACATACACGTGCT
TTATTATCCAAACCGAGGGGGAGGGAAAATAAGTCAATTTGGGTTNCTTT
CCTCAAGGGCACNAATCGNTGCAGAGGAATGGGGGAATATCCCTGGTGGG
CCTGCCGGGG
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