EY702928

Overview
NameEY702928
Unique NameEY702928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702928 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.650e-11
Identity = 58/196 (29.59%), Postives = 92/196 (46.94%), Query Frame = 2
Query:   17 IGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN-----HPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 580
            I G GTV  GRVE GV+K G    +V  G + +TT V  +EM  + L E++ GDNVG  ++ +   +++RG V +  K        NF +QV ++N           +GY P     T+ +  K     T     +G+ +    K +  GD   +K    +P+ +E         RFA+R+  +TV  GV+  + K
Sbjct:  231 ITGRGTVATGRVERGVVKIGDSVEIVGLGATKITT-VTGLEMFQKTLDESIAGDNVGILLRGIQKTEIQRGMVLAKPKS--ITPHTNFEAQVYVLNKEEGGRDTPFFSGYRPQFYVRTTDVTGKIESFCTD----AGEPI----KMVLPGDRIKMKAELIQPIAIERNM------RFAIREGGKTVGAGVVGKILK 409          
BLAST of EY702928 vs. ExPASy Swiss-Prot
Match: EFTU_EUGGR (Elongation factor Tu, chloroplastic OS=Euglena gracilis GN=tufA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.650e-11
Identity = 56/190 (29.47%), Postives = 92/190 (48.42%), Query Frame = 2
Query:   17 IGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 574
            I G GTV  GRVE G +K G  V     GL    +T +  +EM  ++L EAL GDNVG  ++ +   D++RG V   +K         F SQV I+    + G  + P  + +     V+ +++  KI+     + +   + +  GD   +K+   +P+ +E         RFA+R+  +TV  GV+ S+
Sbjct:  231 ITGRGTVATGRVERGTIKVGETVEL--VGLKDTRSTTITGLEMFQKSLDEALAGDNVGVLLRGIQKNDVERGMVL--AKPRTINPHTKFDSQVYILTK--EEGGRHTPFFEGYRPQFYVRTTDVTGKIE-SFRSDNDNPAQMVMPGDRIKMKVELIQPIAIEKGM------RFAIREGGRTVGAGVVLSI 407          
The following BLAST results are available for this feature:
BLAST of EY702928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
EFTU_PROWI2.650e-1129.59Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_EUGGR2.650e-1129.47Elongation factor Tu, chloroplastic OS=Euglena gra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-013-H03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702928 ID=EY702928; Name=EY702928; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCG
TTGAGACCGGTGTGCTCAAGCCTGGTATGGTGGTGACATTTGGTCCCTCT
GGATTGACAACTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCA
GGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTG
TCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCG
GCCAGGGAAGCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCC
TGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCC
ACATTGCTGTCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCT
GGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGG
AATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCG
ACTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTA
GCTGTTGGTGTGATCAAGAGTGTTGAAAAGAAGGATCCATCGGGTGCCAA
GGTCACCAAGTCTGCTGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTAT
CTGCTATAGNTAGCTTTTATTTTCTCTGTTTATGCTATTTTTGTCATGTT
TTAGTTTGGTTTACGGGAGACTTCATTTTAATTCTCTGAAATTGGTTTAT
ATCATTGAGTTTTTTTTGGTAAGNTGATAAACAGTTTTTGGATGTCAAAC
ATTTGTTTCAGAATTAGCGNTAGTGCTCGATTTTGAAAATTAGTCGGGCT
CATATATTTTGTAGGGGTGTATTAATTTTTGCTGAGAGAATGGCGACTGG
TTTCATGGTCAAAAAAAAAAAAAG
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