EY650120

Overview
NameEY650120
Unique NameEY650120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_SACD2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.222e-13
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 3 
Query:  546 SRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            ++RP TPLLD ++ P  +R LS ++L QLA ELR  +++ V +TGGH G+ LGV+ELTVA   +L+   DR+  DV H T
Sbjct:    7 TQRPNTPLLDVVDTPARLRELSEKQLPQLAKELREYLLYTVGQTGGHFGAGLGVVELTVALHYVLNTPDDRLVWDVGHQT 86
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.222e-13
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 3 
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P TPLLD ++ P  M+ LS R+L QLADELRS+ +  VS TGGHLG+ LGV+ELTVA   +    +D+I  DV H
Sbjct:    5 PKTPLLDLVHRPADMKGLSDRQLVQLADELRSETVSAVSVTGGHLGAGLGVVELTVALHAVFDTPRDKIIWDVGH 79
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.596e-13
Identity = 50/119 (42.02%), Postives = 69/119 (57.98%), Query Frame = 3 
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQH--MASLITKGLKWIDXFGPGQS 896
            RP TPLLD +  P  M+ LS  EL++LADE+RS+VI  V++TGGHLGS+LGV+ELTVA   + +   D++  DV H     K     +  MRT+ Q   ++    +     D FG   S
Sbjct:    7 RPETPLLDRVCCPADMKALSDAELERLADEVRSEVISVVAETGGHLGSSLGVVELTVALHAVFNTPTDKLVWDVGHQCYPHKILTGRREQMRTLRQKGGLSGFTKRSESAYDPFGAAHS 125
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.085e-13
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 3 
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQ--HMASLITKGLKWIDXFGPGQS 896
            RP TP LD +  P+ ++ L+ REL+ LADELR++ I  VS TGGHLG+ LGV+ELTVA   +    +D+I  DV H     K     +  +RT+ Q   ++    +     D FG G S
Sbjct:    4 RPCTPTLDRVTLPVDIKGLTDRELRSLADELRAETISAVSVTGGHLGAGLGVVELTVALHAIFDAPRDKIIWDVGHQCYPHKILTGRRDRIRTLRQGGGLSGFTKRSESPYDCFGAGHS 122
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 3 
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P TPLLDT++ P   R LSI +L+QLADE+R++ I  VS+TGGHLG+ LGV+ELTVA   +    KD +  DV H
Sbjct:    3 PVTPLLDTVSSPADTRGLSIAQLRQLADEVRAETIDAVSQTGGHLGAGLGVVELTVALHHVYETPKDILIWDVGH 77
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_AGRT5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 3 
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQH--MASLITKGLKWIDXFGPGQS 896
            P TPLLD +N+P  ++ +  R+L +LA ELR ++I  VSKTGGHLG+ LGV+ELT+A   + +  +DR+  DV H     K     +  +RT+ Q   ++    +     D FG G S
Sbjct:    5 PQTPLLDRVNFPSDLKEIDDRDLPELARELRDEMIDAVSKTGGHLGAGLGVVELTIAIHKVFNTPEDRLIFDVGHQCYPHKILTGRRDRIRTLRQEDGLSGFTRRAESEYDDFGAGHS 122
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 3 
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            RP TPLLDT++ P  +R L   +L+Q ADELR+++I  V  TGGHLGS LGV+ELT A   +    +D++  DV H
Sbjct:    4 RPHTPLLDTVDVPADLRKLKPEDLRQFADELRAEMISAVGTTGGHLGSGLGVVELTTAIHYVFDTPRDKLVWDVGH 79
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = 3 
Query:  507 GVCASLSERGEYHSRRPP-------------TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            GVC + +   +  SR P              TPLLDTI  P  +R L + +L+Q+ADELR + I  VS TGGH G+ LGV+ELT A   +    +DR+  DV H
Sbjct:    2 GVCCATAPASDRRSRHPDMQNWNVAVTDFSKTPLLDTIRTPADLRKLRVEQLRQVADELRKETIDAVSVTGGHFGAGLGVVELTTAIHYIFDTPRDRLIWDVGH 105
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 3 
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            RP TPLLDTI  P   R LS+ +L+QLA E+R+++I  VS TGGHLGS LGV+ELTVA   +     DRI  DV H
Sbjct:    4 RPITPLLDTIRGPSDTRGLSVAQLEQLAREVRAEMIDAVSVTGGHLGSGLGVVELTVALHHVFDTPDDRIIWDVGH 79
[Close]
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 3 
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            RP TPLLDTI  P   R LS+ +L+QLA E+R+++I  VS TGGHLGS LGV+ELTVA   +     DRI  DV H
Sbjct:    4 RPITPLLDTIRGPSDTRGLSVAQLEQLAREVRAEMIDAVSVTGGHLGSGLGVVELTVALHHVFDTPDDRIIWDVGH 79
The following BLAST results are available for this feature:
BLAST of EY650120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
DXS_SACD21.222e-1348.751-deoxy-D-xylulose-5-phosphate synthase OS=Sacchar... [more]
DXS2_ROSDO1.222e-1354.671-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]
DXS1_RHOS41.596e-1342.021-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS2_RHOS42.085e-1340.341-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_PHEZH2.723e-1354.671-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]
DXS_AGRT52.723e-1338.981-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_SPHAL4.645e-1350.001-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_NITHX4.645e-1341.351-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS2_RHORT4.645e-1356.581-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS1_RHORT4.645e-1356.581-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650120 ID=EY650120; Name=EY650120; organism=Citrus sinensis; type=EST; length=897bp
CGATCAATCACAATCTACAAATTTGGGGGGTGGGGTGTAGAGCTTCATGC
CTTTAACAGACCCACTAAATTTGCCTTAAGCATTATCAACCACAAACACG
CGTTCGGATTACTTCCTTCATTCGTTTATTATATTTTTTTAATATATTCA
ATATTTATATTCAACCTACTTCACTTCAGTGGCATCCAGCACGCAGGAAG
CACTGAATACATTCACTGTGAGAAGATGACTGACCAGTCGCGAGTGTCTT
TAATTATATACTGATTTGCCGGAGTTAGCATATTATTCTTCACTCACTGC
GTGATGTTTTCTTTTCTGGGGTGTTCTATGCAATACCTGGTATGGCTCTC
TCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAACAGATTCGGGTCC
CCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAGCAGCTCTTTTTT
CCCATTTGTCACACAAGCTCGACAATCATCAGATACAGCTCAAGAAAAGG
CCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGAGTATCACTCACG
AAGACCACCGACACCTCTCTTGGACACCATAAACTATCCAATTCACATGA
GAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGATGAGTTGCGGTCC
GATGTCATATTCAATGTTTCNAAAACCGGGGGTCACTTGGGCTCAACTCT
TGGTGTGATTGAGCTTACCGTGGCCTTCATTATGTTGTCATGCTCCAAAG
ACCGGATCTGNGAGGATGTCNGTCATCACACTACCCTCATAAAATCTGAC
TGGGAGAAGGGATANATGCGTACCATGATGCAACATATGGCCTCTCTGAT
CACTAAAGGGCTGAAATGGATTGATNGCTTTGGACCGGGCCAGTCTA
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