EY650120

Overview
NameEY650120
Unique NameEY650120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_MARMS (1-deoxy-D-xylulose-5-phosphate synthase OS=Marinomonas sp. (strain MWYL1) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            E  + RP TPLLD +N P  +R     +L  L  ELR  ++++V +TGGH G+ LGV+ELTVA   + +  +DRI  DV H
Sbjct:    4 EIPTARPDTPLLDEVNSPADLRAFKKEQLPALVRELREFMLYSVGQTGGHFGAGLGVVELTVALHYLYNTPEDRIVWDVGH 84          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSYA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            RP TPLLD ++ P  ++  S  +L  LADELR  V+++  ++GGH G+ LGVIELT+A   +L   +D+I  DV H
Sbjct:   38 RPYTPLLDRVDSPADLKAFSTADLIALADELRLFVLYSAGQSGGHFGANLGVIELTIALHYLLDAPQDQIVWDVGH 113          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  564 PLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK 794
            PLL+TI  P+ +R L  + L QLADELR  ++ +V+KTGGHL S LG +ELT+A   + +   DR+  DV H T + K
Sbjct:    3 PLLNTITDPVKLRALDRKLLPQLADELRQFLVESVAKTGGHLSSNLGTVELTIALHYVFNTPYDRLVWDVGHQTYVHK 80          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BURP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  567 LLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            LL TI+ P  +R L  R+L+ LADELR+ V+ +VS+TGGHL S LG +ELT+A   +    +DRI  DV H T
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSQTGGHLSSNLGTVELTIALHYVFDTPRDRIVWDVGHQT 76          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BORA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella avium (strain 197N) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            T  LD I+ P  +R L  R+LK +ADELR+ V+ +VSKTGGHL S LG +ELT+A   +     DRI  DV H T
Sbjct:    3 TEHLDRIHSPADLRKLDRRDLKPIADELRAFVLESVSKTGGHLSSNLGTVELTLALHYVFDTPHDRIVWDVGHQT 77          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT---TLIKSDWEKGXMRTMMQH--MASLITKGLKWIDXFGPGQS 896
            R  TPLLD +  P  +R     +L +LADELR++ I  VS TGGHLG+ LGVIELTVA   + +  +DRI  DV H      ++    EK  +RT+ Q   ++    +     D FG G S
Sbjct:    3 RTLTPLLDRVCEPQDLRAFPESDLARLADELRAETIDVVSVTGGHLGAGLGVIELTVALHYVFNTPEDRIIWDVGHQAYPHKILTGRREK--IRTLRQEGGLSGFTKRSESVYDPFGAGHS 121          
The following BLAST results are available for this feature:
BLAST of EY650120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
DXS_MARMS5.678e-1144.441-deoxy-D-xylulose-5-phosphate synthase OS=Marinom... [more]
DXS_PSYA27.416e-1146.051-deoxy-D-xylulose-5-phosphate synthase OS=Psychro... [more]
DXS_NITMU7.416e-1147.441-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_BURP87.416e-1150.681-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BORA17.416e-1150.671-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_BARHE9.685e-1140.501-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650120 ID=EY650120; Name=EY650120; organism=Citrus sinensis; type=EST; length=897bp
CGATCAATCACAATCTACAAATTTGGGGGGTGGGGTGTAGAGCTTCATGC
CTTTAACAGACCCACTAAATTTGCCTTAAGCATTATCAACCACAAACACG
CGTTCGGATTACTTCCTTCATTCGTTTATTATATTTTTTTAATATATTCA
ATATTTATATTCAACCTACTTCACTTCAGTGGCATCCAGCACGCAGGAAG
CACTGAATACATTCACTGTGAGAAGATGACTGACCAGTCGCGAGTGTCTT
TAATTATATACTGATTTGCCGGAGTTAGCATATTATTCTTCACTCACTGC
GTGATGTTTTCTTTTCTGGGGTGTTCTATGCAATACCTGGTATGGCTCTC
TCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAACAGATTCGGGTCC
CCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAGCAGCTCTTTTTT
CCCATTTGTCACACAAGCTCGACAATCATCAGATACAGCTCAAGAAAAGG
CCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGAGTATCACTCACG
AAGACCACCGACACCTCTCTTGGACACCATAAACTATCCAATTCACATGA
GAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGATGAGTTGCGGTCC
GATGTCATATTCAATGTTTCNAAAACCGGGGGTCACTTGGGCTCAACTCT
TGGTGTGATTGAGCTTACCGTGGCCTTCATTATGTTGTCATGCTCCAAAG
ACCGGATCTGNGAGGATGTCNGTCATCACACTACCCTCATAAAATCTGAC
TGGGAGAAGGGATANATGCGTACCATGATGCAACATATGGCCTCTCTGAT
CACTAAAGGGCTGAAATGGATTGATNGCTTTGGACCGGGCCAGTCTA
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