EY650120

Overview
NameEY650120
Unique NameEY650120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_METPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylibium petroleiphilum (strain PM1) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  564 PLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            PLL TI+ P  +R LS  ELKQLA ELR  V+ +VS+TGGHL S LG +ELT+A   + +  +DR+  DV H T
Sbjct:    5 PLLSTIDQPADLRGLSRAELKQLAQELRDHVLTSVSQTGGHLSSNLGTVELTIALHHVFNTPQDRLVWDVGHQT 78          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_ACIAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Acinetobacter sp. (strain ADP1) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH--HTTLIKSDWEKGXMRTMMQH-MASLITKGLKWIDXFGPGQS 896
            E  + RP TPLLD I++P  +R L   +L Q+ADELR  +++   ++GGH G+ LGVIELTVA     +   DR+  DV H  +   + +   +  M    QH +A+   +     D FG G S
Sbjct:    8 EIPTHRPVTPLLDEIDHPQQLRQLEQSQLTQVADELRQFILYAAGQSGGHFGANLGVIELTVALHYCFNTPHDRLIWDVGHQAYPHKVLTGRREQLMTIRAQHGLAAFPAREESVFDTFGVGHS 131          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 41/75 (54.67%), Postives = 47/75 (62.67%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            TPLLD I  P  +R L    L+QLADELR + I  V  TGGHLGS LGVIELTVA   + +  KD +  DV H T
Sbjct:    7 TPLLDKIKTPAELRQLDRNSLRQLADELRKETISAVGVTGGHLGSGLGVIELTVALHYVFNTPKDALVWDVGHQT 81          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.305e-12
Identity = 41/75 (54.67%), Postives = 47/75 (62.67%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            TPLLD I  P  +R L    L+QLADELR + I  V  TGGHLGS LGVIELTVA   + +  KD +  DV H T
Sbjct:    7 TPLLDKIKTPAELRQLDRNSLRQLADELRKETISAVGVTGGHLGSGLGVIELTVALHYVFNTPKDALVWDVGHQT 81          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-12
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P TPLLD + YP  +R L  R+L QLA E+R ++I  VS+TGGHLG+ LGV+ELT+A   +     DR+  DV H
Sbjct:    5 PKTPLLDQVIYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPDDRLIFDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-12
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P TPLLD + YP  +R L  R+L QLA E+R ++I  VS+TGGHLG+ LGV+ELT+A   +     DR+  DV H
Sbjct:    5 PKTPLLDQVIYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPDDRLIFDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-12
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            E    RP TPLLD  + P  +R L+  +L+ LADELR D+++ V +TGGH G+ LGVIELT+A   +     DR+  DV H
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQDLLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGH 87          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BRUO2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-12
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            RP TPLLD +  P  +R L  R+L QLA+ELR+++I  VS TGGHLG+ LGV+ELTVA   + +   DRI  DV H
Sbjct:    3 RPSTPLLDKVPTPDRLRALPERDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRIIWDVGH 78          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  555 PPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            P TPLLD ++YP  ++ +  R+L QLA ELR++++  VS+TGGHLG+ LGV+ELT+A   +     DR+  DV H
Sbjct:   10 PATPLLDKVDYPDDLKKIDDRDLPQLAAELRAEMVDAVSRTGGHLGAGLGVVELTIAIHKIFDTPHDRLIFDVGH 84          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEU2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQH--MASLITKGLKWIDXFGPGQS 896
            E    RP TPLLD  + P  +R L   EL+ LADELR +++++V +TGGH G+ LGVIELT+A   +     DR+  DV H     K     +  M T+ Q   +A+   +     D FG G S
Sbjct:    7 EIPRERPVTPLLDRADTPHGLRRLGEAELETLADELRLELLYSVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRARMSTLRQKEGVAAFPRRSESEYDTFGVGHS 130          
The following BLAST results are available for this feature:
BLAST of EY650120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
DXS_METPP2.305e-1252.701-deoxy-D-xylulose-5-phosphate synthase OS=Methyli... [more]
DXS_ACIAD2.305e-1237.101-deoxy-D-xylulose-5-phosphate synthase OS=Acineto... [more]
DXS2_ZYMMO2.305e-1254.671-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom... [more]
DXS1_ZYMMO2.305e-1254.671-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]
DXS_RHIL33.011e-1250.671-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHIE63.011e-1250.671-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_PSEE43.011e-1246.911-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_BRUO23.011e-1253.951-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_RHIME3.932e-1248.001-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_PSEU23.932e-1238.711-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650120 ID=EY650120; Name=EY650120; organism=Citrus sinensis; type=EST; length=897bp
CGATCAATCACAATCTACAAATTTGGGGGGTGGGGTGTAGAGCTTCATGC
CTTTAACAGACCCACTAAATTTGCCTTAAGCATTATCAACCACAAACACG
CGTTCGGATTACTTCCTTCATTCGTTTATTATATTTTTTTAATATATTCA
ATATTTATATTCAACCTACTTCACTTCAGTGGCATCCAGCACGCAGGAAG
CACTGAATACATTCACTGTGAGAAGATGACTGACCAGTCGCGAGTGTCTT
TAATTATATACTGATTTGCCGGAGTTAGCATATTATTCTTCACTCACTGC
GTGATGTTTTCTTTTCTGGGGTGTTCTATGCAATACCTGGTATGGCTCTC
TCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAACAGATTCGGGTCC
CCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAGCAGCTCTTTTTT
CCCATTTGTCACACAAGCTCGACAATCATCAGATACAGCTCAAGAAAAGG
CCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGAGTATCACTCACG
AAGACCACCGACACCTCTCTTGGACACCATAAACTATCCAATTCACATGA
GAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGATGAGTTGCGGTCC
GATGTCATATTCAATGTTTCNAAAACCGGGGGTCACTTGGGCTCAACTCT
TGGTGTGATTGAGCTTACCGTGGCCTTCATTATGTTGTCATGCTCCAAAG
ACCGGATCTGNGAGGATGTCNGTCATCACACTACCCTCATAAAATCTGAC
TGGGAGAAGGGATANATGCGTACCATGATGCAACATATGGCCTCTCTGAT
CACTAAAGGGCTGAAATGGATTGATNGCTTTGGACCGGGCCAGTCTA
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