EY650120

Overview
NameEY650120
Unique NameEY650120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQH--MASLITKGLKWIDXFGPGQS 896
            E    RP TPLLD  + P  +R L   EL+ LADELR +++++V +TGGH G+ LGVIELT+A   +     DR+  DV H     K     +  M T+ Q   +A+   +     D FG G S
Sbjct:    7 EIPRERPVTPLLDQADTPHGLRRLGEAELETLADELRLELLYSVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRARMSTLRQKDGVAAFPRRSESEYDTFGVGHS 130          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEMY (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH----HTTLIKSDWEKGXMRTMMQHMASLITKGLKWIDXFGPGQS 896
            E    RP TPLLD+ N P  +R L+  +L+ LADELR  ++++V ++GGH G+ LGVIELT+A   +     DR+  DV H    H  L       G +R     +A+   +     D FG G S
Sbjct:    7 EIPRERPLTPLLDSANTPDELRRLAEADLETLADELRQYLLYSVGQSGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRERMGSLR-QKDGLAAFPRRSESEYDTFGVGHS 130          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSE14 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHTTLIK-SDWEKGXMRTMMQH--MASLITKGLKWIDXFGPGQS 896
            E    RP TPLLD  + P  +R L   EL+ LADELR +++++V +TGGH G+ LGVIELT+A   +     DR+  DV H     K     +  M T+ Q   +A+   +     D FG G S
Sbjct:    7 EIPRERPVTPLLDRADTPHGLRRLGEAELETLADELRLELLYSVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRARMSTLRQKDGVAAFPRRSESEYDTFGVGHS 130          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_NITEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas eutropha (strain C91) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  564 PLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            PLLD I  P  +RNL   +L QLADELRS +I +V+KTGGHL S LG IELT+A   +     DR+  DV H T
Sbjct:    3 PLLDRIEIPAQLRNLKRSQLPQLADELRSFLIESVAKTGGHLSSNLGTIELTIALHYIFDTPFDRLVWDVGHQT 76          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  546 SRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            S  P TP+LDT+N P  ++NL +  LK LADE+R++ I  VS TGGHLG+ LGV+ELT A   +     D +  DV H
Sbjct:    2 SMTPKTPILDTVNSPADLKNLPLDRLKSLADEVRAETIDAVSVTGGHLGAGLGVVELTTALHHVFDTPTDTLIWDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            TPLLDTI+ P   R  S+ ELKQLA E+R++ I  VS TGGHLG+ LGV+ELTVA   +    KD +  DV H
Sbjct:    5 TPLLDTISSPADTRGFSVAELKQLASEVRAETIDAVSVTGGHLGAGLGVVELTVALHHVFETPKDIVIWDVGH 77          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_ACIAC (1-deoxy-D-xylulose-5-phosphate synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.136e-12
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  564 PLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            PLL T+N P  +R +S  +LK+LA ELR+ V+ +VSKTGGHL S LG +ELTVA   +    +DR+  DV H T
Sbjct:    7 PLLQTVNDPADLRRMSRAQLKELAAELRAFVLDSVSKTGGHLSSNLGTVELTVALHTVFDTPRDRLVWDVGHQT 80          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  552 RPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            RP TPLLD I  P  ++ LS  +L+Q+A ELR + I  VS TGGHLG+ LGV+ELTVA   +    KD++  DV H
Sbjct:    4 RPQTPLLDQIASPADLKRLSDAQLEQVAHELRQETISAVSVTGGHLGAGLGVVELTVALHSVFDTPKDKVIWDVSH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain W619) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            E    RP TPLLD  + P  +R L+  +L+ LADELR ++++ V +TGGH G+ LGVIELT+A   +     DR+  DV H
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLEHLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGH 87          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_PSEF5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 3
Query:  537 EYHSRRPPTPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT---TLIKSDWEKGXMRTMMQHMASLITKGLKWIDXFGPGQS 896
            E   +RP TPLLD    P  +R L   EL+ LADELR ++++ V +TGGH G+ LGVIELT+A   +     DR+  DV H      ++    E+         +A+   +     D FG G S
Sbjct:    7 EIPRKRPTTPLLDRAQTPDGLRRLGEAELETLADELRLELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRREQMASLRQKDGLAAFPRRSESEYDTFGVGHS 130          
The following BLAST results are available for this feature:
BLAST of EY650120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
DXS_PSESM3.932e-1238.711-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEMY3.932e-1237.601-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSE143.932e-1238.711-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_NITEC3.932e-1254.051-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_MARMM3.932e-1248.721-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS_CAUSK3.932e-1254.791-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_ACIAC5.136e-1251.351-deoxy-D-xylulose-5-phosphate synthase OS=Acidovo... [more]
DXS_SILST6.707e-1251.321-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_PSEPW6.707e-1245.681-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEF56.707e-1236.291-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650120 ID=EY650120; Name=EY650120; organism=Citrus sinensis; type=EST; length=897bp
CGATCAATCACAATCTACAAATTTGGGGGGTGGGGTGTAGAGCTTCATGC
CTTTAACAGACCCACTAAATTTGCCTTAAGCATTATCAACCACAAACACG
CGTTCGGATTACTTCCTTCATTCGTTTATTATATTTTTTTAATATATTCA
ATATTTATATTCAACCTACTTCACTTCAGTGGCATCCAGCACGCAGGAAG
CACTGAATACATTCACTGTGAGAAGATGACTGACCAGTCGCGAGTGTCTT
TAATTATATACTGATTTGCCGGAGTTAGCATATTATTCTTCACTCACTGC
GTGATGTTTTCTTTTCTGGGGTGTTCTATGCAATACCTGGTATGGCTCTC
TCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAACAGATTCGGGTCC
CCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAGCAGCTCTTTTTT
CCCATTTGTCACACAAGCTCGACAATCATCAGATACAGCTCAAGAAAAGG
CCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGAGTATCACTCACG
AAGACCACCGACACCTCTCTTGGACACCATAAACTATCCAATTCACATGA
GAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGATGAGTTGCGGTCC
GATGTCATATTCAATGTTTCNAAAACCGGGGGTCACTTGGGCTCAACTCT
TGGTGTGATTGAGCTTACCGTGGCCTTCATTATGTTGTCATGCTCCAAAG
ACCGGATCTGNGAGGATGTCNGTCATCACACTACCCTCATAAAATCTGAC
TGGGAGAAGGGATANATGCGTACCATGATGCAACATATGGCCTCTCTGAT
CACTAAAGGGCTGAAATGGATTGATNGCTTTGGACCGGGCCAGTCTA
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