EY650120

Overview
NameEY650120
Unique NameEY650120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            TPLLDTI  P  +R L I +++Q+ADELR + I  VS TGGH G+ LGV+ELT A   +    +DR+  DV H
Sbjct:    4 TPLLDTIRTPDDLRKLRIDQVQQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGH 76          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BURS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia sp. (strain 383) GN=dxs PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  567 LLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            LL TI+ P  +R L  R+L+ LADELR+ V+ +VSKTGGHL S LG +ELT+A   + +   DRI  DV H T
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQT 76          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BURCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  567 LLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            LL TI+ P  +R L  R+L+ LADELR+ V+ +VSKTGGHL S LG +ELT+A   + +   DRI  DV H T
Sbjct:   16 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQT 88          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BURCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  567 LLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            LL TI+ P  +R L  R+L+ LADELR+ V+ +VSKTGGHL S LG +ELT+A   + +   DRI  DV H T
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQT 76          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BURCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  567 LLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            LL TI+ P  +R L  R+L+ LADELR+ V+ +VSKTGGHL S LG +ELT+A   + +   DRI  DV H T
Sbjct:   16 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQT 88          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BURCC (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  567 LLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            LL TI+ P  +R L  R+L+ LADELR+ V+ +VSKTGGHL S LG +ELT+A   + +   DRI  DV H T
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQT 76          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BURCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=dxs PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  567 LLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            LL TI+ P  +R L  R+L+ LADELR+ V+ +VSKTGGHL S LG +ELT+A   + +   DRI  DV H T
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQT 76          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_BURA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  567 LLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXHHT 782
            LL TI+ P  +R L  R+L+ LADELR+ V+ +VSKTGGHL S LG +ELT+A   + +   DRI  DV H T
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQT 76          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            TPLLDTI  P  +R L I +++Q+ADELR + I  VS TGGH G+ LGV+ELT A   +    +DR+  DV H
Sbjct:    7 TPLLDTIRTPEDLRKLRIDQVRQVADELRLETIDAVSVTGGHFGAGLGVVELTTALHYVFDTPRDRLIWDVGH 79          
BLAST of EY650120 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  561 TPLLDTINYPIHMRNLSIRELKQLADELRSDVIFNVSKTGGHLGSTLGVIELTVAF-IMLSCSKDRIXEDVXH 776
            TPLLDTI  P  +R L + +++Q+ADELR + I  VS TGGH G+ LGV+ELT A   +    +DR+  DV H
Sbjct:    4 TPLLDTIRTPEDLRKLRVDQVQQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGH 76          
The following BLAST results are available for this feature:
BLAST of EY650120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
DXS_RHOP23.329e-1150.681-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BURS33.329e-1152.051-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCM3.329e-1152.051-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCJ3.329e-1152.051-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCH3.329e-1152.051-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCC3.329e-1152.051-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCA3.329e-1152.051-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURA43.329e-1152.051-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_RHOPT4.348e-1150.681-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPS4.348e-1149.321-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-D11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650120 ID=EY650120; Name=EY650120; organism=Citrus sinensis; type=EST; length=897bp
CGATCAATCACAATCTACAAATTTGGGGGGTGGGGTGTAGAGCTTCATGC
CTTTAACAGACCCACTAAATTTGCCTTAAGCATTATCAACCACAAACACG
CGTTCGGATTACTTCCTTCATTCGTTTATTATATTTTTTTAATATATTCA
ATATTTATATTCAACCTACTTCACTTCAGTGGCATCCAGCACGCAGGAAG
CACTGAATACATTCACTGTGAGAAGATGACTGACCAGTCGCGAGTGTCTT
TAATTATATACTGATTTGCCGGAGTTAGCATATTATTCTTCACTCACTGC
GTGATGTTTTCTTTTCTGGGGTGTTCTATGCAATACCTGGTATGGCTCTC
TCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAACAGATTCGGGTCC
CCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAGCAGCTCTTTTTT
CCCATTTGTCACACAAGCTCGACAATCATCAGATACAGCTCAAGAAAAGG
CCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGAGTATCACTCACG
AAGACCACCGACACCTCTCTTGGACACCATAAACTATCCAATTCACATGA
GAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGATGAGTTGCGGTCC
GATGTCATATTCAATGTTTCNAAAACCGGGGGTCACTTGGGCTCAACTCT
TGGTGTGATTGAGCTTACCGTGGCCTTCATTATGTTGTCATGCTCCAAAG
ACCGGATCTGNGAGGATGTCNGTCATCACACTACCCTCATAAAATCTGAC
TGGGAGAAGGGATANATGCGTACCATGATGCAACATATGGCCTCTCTGAT
CACTAAAGGGCTGAAATGGATTGATNGCTTTGGACCGGGCCAGTCTA
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