EY702924

Overview
NameEY702924
Unique NameEY702924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702924_ssr107 microsatellite EY702924_ssr107:107..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3677 contig Csv1_Contig3677:1..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAOM_ASCSU (NAD-dependent malic enzyme, mitochondrial (Fragment) OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.862e-16
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  589 LLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQVPLQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIYR 891
            LL++P  NKG+ FS  ER    L GLLPP  ++QE Q  +++  +R+    L +Y+ +  LQ+RN+KL   ++ D+ +   PIVYTPT G ACQ +G IYR
Sbjct:   80 LLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYR 180          
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAOH_NEOFR (Malic enzyme, hydrogenosomal OS=Neocallimastix frontalis PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.800e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  565 VSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQVPLQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIY 888
            V+  +G  +L DP  NKG AF+  E++   +RGL+PP   S E Q K+   N+ +   PL+K++ +  LQ RN+ L   ++++N     PI+YTP  GEACQK+  I+
Sbjct:   42 VTKKTGLDILNDPKLNKGSAFTADEKDRLGIRGLVPPRPQSLEAQYKRCKTNLDKISDPLEKFIYLNHLQNRNETLYYKMILENFVELAPIIYTPVVGEACQKFHKIF 149          
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAOX_DICDI (NADP-dependent malic enzyme OS=Dictyostelium discoideum GN=malA PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.482e-15
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  589 LLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQVPLQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIYR 891
            +LR+P  NKG  F+ +ER    L+GLLPP V S + Q  + +     +   L++Y+ +  L++RN+ L   LL +N E   PI+YTPT GEACQK+G+ +R
Sbjct:    8 ILRNPSANKGTGFNNEEREKLGLKGLLPPKVESLQEQSDRALSQFTSFNTNLERYIFLNCLRDRNETLFYYLLSNNLELMMPIIYTPTVGEACQKFGNEFR 108          
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAOM_SOLTU (NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.465e-15
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  589 LLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQVP----------LQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIYR 891
            +L DP  NKG AFS  ER+  ++RGLLPP V+S E Q+ + + ++++ +V           L K+  +  L +RN+ L   +L++N E   PIVYTPT G  CQKY  ++R
Sbjct:   52 ILHDPWFNKGTAFSFTERDRLHIRGLLPPNVMSFEQQIARFMADLKRLEVQARDGPSDPYVLAKWRILNRLHDRNETLYYKVLMENIEEYAPIVYTPTVGLVCQKYSGLFR 162          
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAO1_PSYA2 (NAD-dependent malic enzyme OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.444e-14
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  577 SGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQVPLQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIYR 891
            SG +LL  P  NKG AFS +ER+S  L GLLP  + + E Q  +  H +R +   + K++ + ++Q+ N+ L   L+  + E   P++YTPT G+AC+K+  IYR
Sbjct:   12 SGPALLETPLLNKGSAFSSEERDSFNLTGLLPHNIETIEEQSLRAYHQLRSFTTDIDKHIYLRNIQDTNETLFHHLIEQHIEEVMPLIYTPTVGQACEKFSQIYR 116          
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAO1_ACIAD (NAD-dependent malic enzyme OS=Acinetobacter sp. (strain ADP1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.222e-13
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  577 SGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQVPLQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIYR 891
            +GY+LL  P  NKG AF+++ER+   L GL+P  + + E Q ++       +   + K++ + ++Q+ N+ L   L+ D+ E   PI+YTPT GEACQ++  IYR
Sbjct:   17 AGYTLLELPLLNKGSAFTQEERSHFNLHGLIPHVIETIEEQSQRSYQQYGAFNDDINKHIYLRNIQDTNETLFYRLINDHLEEMMPIIYTPTVGEACQRFSDIYR 121          
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAOM_AMAHP (NAD-dependent malic enzyme 65 kDa isoform, mitochondrial OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.596e-13
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  589 LLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQV----------PLQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIYR 891
            +L+DP  NKG AFS  ER+   LRGLLPP V++ E Q+++   ++R  ++           L K+  +  L +RN+ +   +LI+N E   PIV TPT G  CQK+  +YR
Sbjct:   49 ILQDPWFNKGTAFSMTERDRLDLRGLLPPNVMTTEQQIERFTADLRVLELTTKDGPSDTYDLAKWRILNRLHDRNETMFFKVLIENIEEYAPIVSTPTVGLVCQKFSGLYR 159          
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAO1_COLP3 (NAD-dependent malic enzyme OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=sfcA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.596e-13
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  577 SGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQVPLQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIYRS 894
            +G SLL  P  NKG AFS++ER S  L GLLPP   S + Q ++       +Q  + K++ +  + + N+ L   L+ +N     PI+YTPT G+AC+++  IYRS
Sbjct:   13 AGPSLLETPLLNKGSAFSKEERGSFNLTGLLPPRFESIDEQAERAFRQYSCFQTNINKHIYLRAIHDNNETLFFKLVQNNLAEMMPIIYTPTVGDACEQFSDIYRS 118          
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAON_SOLTU (NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13
Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 1
Query:  580 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQ----------VPLQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIYR 891
            G  +L DP  NK   F   ER+   LRGLLPP VIS E Q  + + + R  +          V L K+  +  L +RN+ L   +LIDN +   PI+YTPT G  CQ Y  ++R
Sbjct:   32 GADILHDPWFNKDTGFPMTERDRLGLRGLLPPRVISFEQQYDRFMESFRSLEKNTEGQPDSVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFR 145          
BLAST of EY702924 vs. ExPASy Swiss-Prot
Match: MAO1_PSYCK (NAD-dependent malic enzyme OS=Psychrobacter cryohalolentis (strain K5) GN=sfcA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  577 SGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMVHNIRQYQVPLQKYMAMMDLQERNQKLXL*LLIDNGEGGTPIVYTPTGGEACQKYGSIYR 891
            +G +LL  P  NKG AFS +ER+S  L GLLP  + + E Q  +    +R +   + K++ + ++Q+ N+ L   L+  + E   P++YTPT G+AC+K+  IYR
Sbjct:   12 AGPALLETPLLNKGSAFSSEERDSFNLTGLLPHNIETIEEQSSRAYLQLRSFTSDMDKHIYLRNIQDTNETLFHHLIEQHIEEVMPLIYTPTVGQACEKFSQIYR 116          
The following BLAST results are available for this feature:
BLAST of EY702924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
MAOM_ASCSU5.862e-1643.56NAD-dependent malic enzyme, mitochondrial (Fragmen... [more]
MAOH_NEOFR3.800e-1538.89Malic enzyme, hydrogenosomal OS=Neocallimastix fro... [more]
MAOX_DICDI6.482e-1541.58NADP-dependent malic enzyme OS=Dictyostelium disco... [more]
MAOM_SOLTU8.465e-1539.64NAD-dependent malic enzyme 62 kDa isoform, mitocho... [more]
MAO1_PSYA21.444e-1439.05NAD-dependent malic enzyme OS=Psychrobacter arctic... [more]
MAO1_ACIAD1.222e-1337.14NAD-dependent malic enzyme OS=Acinetobacter sp. (s... [more]
MAOM_AMAHP1.596e-1338.74NAD-dependent malic enzyme 65 kDa isoform, mitocho... [more]
MAO1_COLP31.596e-1338.68NAD-dependent malic enzyme OS=Colwellia psychreryt... [more]
MAON_SOLTU6.067e-1338.60NAD-dependent malic enzyme 59 kDa isoform, mitocho... [more]
MAO1_PSYCK6.067e-1337.14NAD-dependent malic enzyme OS=Psychrobacter cryoha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-013-G10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702924 ID=EY702924; Name=EY702924; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTTTCTTCTGATCTCTTCTTTCTCTTTCTCCGATTTTCTC
TCCGTGTGCTGAAGAAACCAAACAGAAGAGAGAGAAAAAGGGAAAGAGGG
AAGAAGGAGAGAGAGAGCAAAGCTTTAAGACTTCAAAGCCAAAGCTCTGA
TAAGAAGACCCGAAAGACTCTCCCTTCTCTTCTCATTGCCTCTGCAACTT
TTTTTCTATTTTTACTTCGTCACACATTTTTAATCAGCGCAAGACTCTCT
CTTCACACATTTCTCTCGCCATGTTTTCGTTAAACAGAAGCGCTTTTCTG
AATAATCCTGCGAGCATATCAGGCTCGTTCCCTGATAAGCATAGAAGAAT
ACTGCCTACAAGAGTGGTGGTTGCGGGCTCGTCTAACAGAGATAAGAGTA
ACGGCAGTCTTTTAATGGCAACCGATGAAAGCACAGCTACATTAAAAGAA
ATGAGAGATGGCTATGCCGAAGTTGTGGACCCCAAGTCCGGCGTCAGCGG
TGGGGTCCAGGACGTTTATGGTGAGGATACCGCCACCGAAGACCAGCCTG
TCACCCCTTGGTCTGTCTCAGTTGCTAGTGGGTATTCTTTGTTGAGAGAT
CCACACCACAACAAAGGGCTTGCCTTCTCTGAAAAAGAAAGGAATTCACA
TTACTTGCGTGGTCTTCTCCCCCCTACAGTTATATCCCAAGAGCTCCAGG
TGAAGAAAATGGTGCATAATATTCGGCAGTACCAAGTTCCACTCCAGAAG
TACATGGCCATGATGGATCTTCAGGAGAGAAATCAGAAACTGGNTCTATA
GCTTCTCATTGACAATGGTGAGGGAGGTACTCCCATTGTCTATACTCCAA
CTGGGGGAGAAGCTTGCCAGAAGTACGGGAGCATCTATAGGTCG
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