EY650105

Overview
NameEY650105
Unique NameEY650105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: DPOE3_HUMAN (DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  310 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF-REMEG-----E*MARDKD 624
            ++ R +D  LP A ++RI+K+ALP    ISK+A+  +    S F+ + T  A++   + KRKT+N  D+L AM  + F+ +V PLK  L+ + RE +G     E   +DKD
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKD 111          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: DPOE3_BOVIN (DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  310 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRF-REMEG-----E*MARDKD 624
            ++ R +D  LP A ++RI+K+ALP    ISK+A+  +    S F+ + T  A++   + KRKT+N  D+L AM  + F+ +V PLK  L+ + RE +G     E   +DKD
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKD 111          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 30/79 (37.97%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  322 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVE 558
            ++D  LP A +++I+K+ LP + ++++DA++ + EC  EFI+ V+ E++D C +E ++TI  + +L A+  LGF EY+E
Sbjct:   11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIE 89          
BLAST of EY650105 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.274e-11
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  319 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVE 558
            +E +  LP A VS+++K+ LP + K S + ++ + EC  EFI  ++ EA+D C RE+++TI  + ++ A+T LGF +Y +
Sbjct:    7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQ 86          
The following BLAST results are available for this feature:
BLAST of EY650105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DPOE3_HUMAN5.051e-1236.94DNA polymerase epsilon subunit 3 OS=Homo sapiens G... [more]
DPOE3_BOVIN5.051e-1236.94DNA polymerase epsilon subunit 3 OS=Bos taurus GN=... [more]
NC2B_ARATH1.919e-1137.97Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]
NC2B_DICDI3.274e-1137.50Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-C06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650105 ID=EY650105; Name=EY650105; organism=Citrus sinensis; type=EST; length=885bp
CTTGAGTTTTGTCTTCAAAGTTTTAATGGGTGATGATTTTACCTGAAATC
CAAAGGAATTTTTTTTTTTTTAAAAAAAAAAAATTGTGCTTCAAGCTAGC
TAGCCTTATAATTAACGTTTTCATGCATGCACTTAGAATTCAGTAAAAGC
TTCAAATTTTCTTCCGCAAAGCCTTCAATTTAAGCACCACCCTTCACCAG
AAGTACATAAAAAGCTTTTTAATTTAAGTTCATCTCCAAAATAATCATGG
GAGACTCGGATAATGATTCGGGAGGTGAAAGATAGAGGCAGCACGGCTCA
TCCAGGGAGCTGTCGCCGAGGGAGCAGGACAGGTTCCTGCCGATAGCAAA
CGTGAGCAGGATCATGAAAAAGGCCCTGCCCGCGAATGCCAAGATATCCA
AGGATGCCAAGGAGACCGTGCAAGAGTGCGTCTCCGAGTTCATTAGCTTC
GTCACCGGCGAGGCCTCCGATAAGTGCCAGAGGGAGAAGCGAAAGACCAT
CAATGGAGACGATCTCCTGTGGGCAATGACCACTCTGGGCTTCGAGGAAT
ACGTGGAGCCGCTCAAGGTTTACCTGCAGAGGTTCAGGGAGATGGAAGGG
GAGTAAATGGCGCGTGACAAGGACGCGCCGGCAGGTCACTGTGTTGGCGG
TGCGATTGGCGGATACTACGGCGGGATGATGATGATGGGACACNNGAGGT
AACTCAATCAGGGGACGTGATGGCTCTGGTGGGTTTATCATCAATGGCTT
AGTGCCCAAGGGTGGGCCCTACATTGGNTGTAGCTTAGTACGCCANATAG
GGGAAAGAGTCTGGAGGTGGATCTCTGAGACGGGAACCCGTACGGTGAAA
TNCGGGGGACATGGGATTGAACTCTGGGGCTACTN
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