EY650102 | Citrus Genome Database

Overview


Name	EY650102
Unique Name	EY650102
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	931

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_BACHD (Valyl-tRNA synthetase OS=Bacillus halodurans GN=valS PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.675e-48
Identity = 85/168 (50.60%), Postives = 116/168 (69.05%), Query Frame = 2

Query:   74 RMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNKISKPCGVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVRLTKR 577
            +  ++M  +Y+P  +E  WY +W    +F A +  +K    IV+PPPNVTG LH+GHA  TA+QD + R +RM GY+ LW+PGMDHAGIATQ  VE KL  E K +R+D+GRE FV + W+WK+EY   I +Q  ++G SLD+SRE FT+DE  SKAV E FV+L ++
Sbjct:    3 KQDQEMPTKYHPQDIESKWYEYWIEGKFFEATSDETKKPYTIVIPPPNVTGKLHLGHAWDTALQDILSRLKRMQGYDTLWLPGMDHAGIATQAKVEAKLREEGK-SRYDLGREAFVEKTWEWKEEYADFIRQQWAKLGLSLDYSRERFTLDEGLSKAVREVFVKLYEK 169

HSP 2 Score: 31.187 bits (69), Expect = 8.675e-48
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  568 YKEGLIYRDLRLVNWDWVLRTAI 636
            Y++GLIYR   ++NWD V +TA+
Sbjct:  167 YEKGLIYRGEYIINWDPVTKTAL 189

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_XANC5 (Valyl-tRNA synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=valS PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.130e-47
Identity = 85/160 (53.12%), Postives = 108/160 (67.50%), Query Frame = 2

Query:   89 MAKEYNPSSVEKSWYSWWENSGYFIADNKISKPCGVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERK-LTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVR 565
            +A  Y+PSS E   Y+ WE +GYF+   K  +P  V+ LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L  E K  TR  +GRE F+++VW+WK E G TI RQ RR+G S DWSR  FTMD + S AV EAFVR
Sbjct:    4 LASSYDPSSFESRLYAQWEAAGYFVPSGK-GEPYTVL-LPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNLALEGKGQTRDSLGREGFIAKVWEWKAESGDTIERQMRRLGTSSDWSRSTFTMDPQPSAAVNEAFVR 161

HSP 2 Score: 41.2022 bits (95), Expect = 1.130e-47
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1

Query:  568 YKEGLIYRDLRLVNWDWVLRTAICCIGRDNVD 663
            Y++GLIYR  RLVNWD VL+TAI  +  +NV+
Sbjct:  163 YEQGLIYRGQRLVNWDPVLKTAISDLEVENVE 194

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_RHIME (Valyl-tRNA synthetase OS=Rhizobium meliloti GN=valS PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.130e-47
Identity = 84/162 (51.85%), Postives = 109/162 (67.28%), Query Frame = 2

Query:   95 KEYNPSSVEKSWYSWWENSGYFIA--DNKISKPCGVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVRLTK 574
            K Y+ ++VE      W+ +  F A  + K       IV+PPPNVTG+LH+GHAL   +QD ++R+ RM G + LW PGMDHAGIATQ+VVE++LM  +  +R D+GRE F+  VW+WK E GG I  Q +R+GAS DWSRE FTMDE  S+AV E FV L K
Sbjct:    4 KTYDSAAVEPKIAKAWDEADAFRAGVNAKPDAETFTIVIPPPNVTGSLHMGHALNNTLQDIMVRFERMRGKDVLWQPGMDHAGIATQMVVERQLMERQLPSRRDMGREAFIERVWEWKAESGGLIFNQLKRLGASCDWSRERFTMDEGLSEAVIEVFVSLYK 165

HSP 2 Score: 43.5134 bits (101), Expect = 1.130e-47
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1

Query:  562 SAYKEGLIYRDLRLVNWDWVLRTAICCIGRDNVDL 666
            S YKEGLIYRD RLVNWD  L+TAI  I  + V++
Sbjct:  162 SLYKEGLIYRDTRLVNWDPKLQTAISDIEVEPVEV 196

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_XANAC (Valyl-tRNA synthetase OS=Xanthomonas axonopodis pv. citri GN=valS PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.130e-47
Identity = 85/160 (53.12%), Postives = 108/160 (67.50%), Query Frame = 2

Query:   89 MAKEYNPSSVEKSWYSWWENSGYFIADNKISKPCGVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERK-LTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVR 565
            +A  Y+PSS E   Y+ WE +GYF+   K  +P  V+ LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L  E K  TR  +GRE F+++VW+WK E G TI RQ RR+G S DWSR  FTMD + S AV EAFVR
Sbjct:    4 LASSYDPSSFESRLYAQWEAAGYFVPSGK-GEPYTVL-LPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNLALEGKGQTRDSLGREGFIAKVWEWKAESGDTIERQMRRLGTSSDWSRSTFTMDPQPSAAVNEAFVR 161

HSP 2 Score: 41.2022 bits (95), Expect = 1.130e-47
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1

Query:  568 YKEGLIYRDLRLVNWDWVLRTAICCIGRDNVD 663
            Y++GLIYR  RLVNWD VL+TAI  +  +NV+
Sbjct:  163 YEQGLIYRGQRLVNWDPVLKTAISDLEVENVE 194

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_BRUME (Valyl-tRNA synthetase OS=Brucella melitensis GN=valS PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.473e-47
Identity = 86/166 (51.81%), Postives = 112/166 (67.47%), Query Frame = 2

Query:   89 MAKEYNPSSVEKSWYSWWENSGYFIADNKISKPCG---VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVRLTKR 577
            + K Y+ ++ E      WE +G F A    +KP      +V+PPPNVTG+LH+GHAL   IQD ++R+ RM G N LW PGMDHAGIATQ+VVE++L   ++  RH +GRE+F+  +W+WK E GG I  Q RR+GAS DWSRE FTMDE  S+AV E FV L K+
Sbjct:    2 LEKTYDAAATEPKIAERWEEAGAFKAGAG-AKPGADPFAVVIPPPNVTGSLHMGHALNNTIQDIMVRFERMRGKNVLWQPGMDHAGIATQMVVERQLAERKEPNRHAMGREKFIERIWQWKAESGGMISNQLRRLGASCDWSRERFTMDEGLSRAVLEVFVTLYKQ 166

HSP 2 Score: 38.891 bits (89), Expect = 1.473e-47
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 1

Query:  568 YKEGLIYRDLRLVNWDWVLRTAI 636
            YK+GLIYRD RLVNWD  L TAI
Sbjct:  164 YKQGLIYRDKRLVNWDPKLLTAI 186

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_BORPE (Valyl-tRNA synthetase OS=Bordetella pertussis GN=valS PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.919e-47
Identity = 86/178 (48.31%), Postives = 117/178 (65.73%), Query Frame = 2

Query:   47 PYTPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNKISKPCG----VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVRL 568
            P  P+ E    S++++K + P+ +E  WY  W   GYF A   +         VI  PPPNVTG LH+GHA    I D ++R+ RM G + ++VPG DHAGIATQ+VVE++L  + K++RHD+GRE+FV +VW+WK++ G TI  Q RR+GAS DW RE FTMD + S+ V E FVRL
Sbjct:    6 PNQPVNE----SQELSKSFEPAEIETRWYDEWAKRGYFDAGRHVETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGDDTVFVPGTDHAGIATQIVVERQLDAQ-KVSRHDLGREKFVEKVWEWKEQSGSTITGQVRRLGASADWPREYFTMDARMSRGVAETFVRL 178

HSP 2 Score: 34.2686 bits (77), Expect = 1.919e-47
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  568 YKEGLIYRDLRLVNWDWVLRTAI 636
            Y++GLIYR  RLVNWD  L TA+
Sbjct:  179 YQQGLIYRGKRLVNWDPKLLTAV 201

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_BORBR (Valyl-tRNA synthetase OS=Bordetella bronchiseptica GN=valS PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.919e-47
Identity = 86/178 (48.31%), Postives = 117/178 (65.73%), Query Frame = 2

Query:   47 PYTPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNKISKPCG----VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVRL 568
            P  P+ E    S++++K + P+ +E  WY  W   GYF A   +         VI  PPPNVTG LH+GHA    I D ++R+ RM G + ++VPG DHAGIATQ+VVE++L  + K++RHD+GRE+FV +VW+WK++ G TI  Q RR+GAS DW RE FTMD + S+ V E FVRL
Sbjct:    6 PNQPVNE----SQELSKSFEPAEIETRWYDEWAKRGYFDAGRHVETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGDDTVFVPGTDHAGIATQIVVERQLDAQ-KVSRHDLGREKFVEKVWEWKEQSGSTITGQVRRLGASADWPREYFTMDARMSRGVAETFVRL 178

HSP 2 Score: 34.2686 bits (77), Expect = 1.919e-47
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  568 YKEGLIYRDLRLVNWDWVLRTAI 636
            Y++GLIYR  RLVNWD  L TA+
Sbjct:  179 YQQGLIYRGKRLVNWDPKLLTAV 201

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_BORPA (Valyl-tRNA synthetase OS=Bordetella parapertussis GN=valS PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.501e-47
Identity = 86/178 (48.31%), Postives = 116/178 (65.17%), Query Frame = 2

Query:   47 PYTPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNKISKPCG----VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVRL 568
            P  P+ E +++SK     + P+ +E  WY  W   GYF A   +         VI  PPPNVTG LH+GHA    I D ++R+ RM G + ++VPG DHAGIATQ+VVE++L  + K++RHD+GRE+FV +VW+WK++ G TI  Q RR+GAS DW RE FTMD + S+ V E FVRL
Sbjct:    6 PNQPVNESQKLSKS----FEPAEIETRWYDEWAKRGYFDAGRHVETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGDDTVFVPGTDHAGIATQIVVERQLDAQ-KVSRHDLGREKFVEKVWEWKEQSGSTITGQVRRLGASADWPREYFTMDARMSRGVAETFVRL 178

HSP 2 Score: 34.2686 bits (77), Expect = 2.501e-47
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  568 YKEGLIYRDLRLVNWDWVLRTAI 636
            Y++GLIYR  RLVNWD  L TA+
Sbjct:  179 YQQGLIYRGKRLVNWDPKLLTAV 201

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_XANCP (Valyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris GN=valS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.501e-47
Identity = 85/166 (51.20%), Postives = 110/166 (66.27%), Query Frame = 2

Query:   86 QMAKEYNPSSVEKSWYSWWENSGYFIADNKISKPCG-----VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERK-LTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVR 565
            Q+A  Y+PSS E   Y+ WE++G+F       KP G      ++LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L  E K  TR  +GRE F+++VW+WK + G TI RQ RR+G S DWSR  FTMD + S AVTEAFVR
Sbjct:    3 QLASSYDPSSFESRLYAQWESAGHF-------KPSGSGEPYTVLLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNLALEGKGETRDTLGREGFIAKVWEWKAQSGDTIERQMRRLGTSSDWSRSTFTMDPQPSAAVTEAFVR 161

HSP 2 Score: 41.2022 bits (95), Expect = 2.501e-47
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1

Query:  568 YKEGLIYRDLRLVNWDWVLRTAICCIGRDNVD 663
            Y++GLIYR  RLVNWD VL+TAI  +  +NV+
Sbjct:  163 YEQGLIYRGQRLVNWDPVLKTAISDLEVENVE 194

[Close]

BLAST of EY650102 vs. ExPASy Swiss-Prot
Match: SYV_XANCB (Valyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain B100) GN=valS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.501e-47
Identity = 85/166 (51.20%), Postives = 110/166 (66.27%), Query Frame = 2

Query:   86 QMAKEYNPSSVEKSWYSWWENSGYFIADNKISKPCG-----VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERK-LTRHDIGREQFVSEVWKWKDEYGGTILRQQRRVGASLDWSRECFTMDEKRSKAVTEAFVR 565
            Q+A  Y+PSS E   Y+ WE++G+F       KP G      ++LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L  E K  TR  +GRE F+++VW+WK + G TI RQ RR+G S DWSR  FTMD + S AVTEAFVR
Sbjct:    3 QLASSYDPSSFESRLYAQWESAGHF-------KPSGSGEPYTVLLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNLALEGKGETRDTLGREGFIAKVWEWKAQSGDTIERQMRRLGTSSDWSRSTFTMDPQPSAAVTEAFVR 161

HSP 2 Score: 41.2022 bits (95), Expect = 2.501e-47
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1

Query:  568 YKEGLIYRDLRLVNWDWVLRTAICCIGRDNVD 663
            Y++GLIYR  RLVNWD VL+TAI  +  +NV+
Sbjct:  163 YEQGLIYRGQRLVNWDPVLKTAISDLEVENVE 194

The following BLAST results are available for this feature:

BLAST of EY650102 vs. ExPASy Swiss-Prot

BLAST of EY650102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412


Match Name	E-value	Identity	Description
SYV_BACHD	8.675e-48	50.60	Valyl-tRNA synthetase OS=Bacillus halodurans GN=va...	[more]
SYV_XANC5	1.130e-47	53.13	Valyl-tRNA synthetase OS=Xanthomonas campestris pv...	[more]
SYV_RHIME	1.130e-47	51.85	Valyl-tRNA synthetase OS=Rhizobium meliloti GN=val...	[more]
SYV_XANAC	1.130e-47	53.13	Valyl-tRNA synthetase OS=Xanthomonas axonopodis pv...	[more]
SYV_BRUME	1.473e-47	51.81	Valyl-tRNA synthetase OS=Brucella melitensis GN=va...	[more]
SYV_BORPE	1.919e-47	48.31	Valyl-tRNA synthetase OS=Bordetella pertussis GN=v...	[more]
SYV_BORBR	1.919e-47	48.31	Valyl-tRNA synthetase OS=Bordetella bronchiseptica...	[more]
SYV_BORPA	2.501e-47	48.31	Valyl-tRNA synthetase OS=Bordetella parapertussis ...	[more]
SYV_XANCP	2.501e-47	51.20	Valyl-tRNA synthetase OS=Xanthomonas campestris pv...	[more]
SYV_XANCB	2.501e-47	51.20	Valyl-tRNA synthetase OS=Xanthomonas campestris pv...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-007-C03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY650102 ID=EY650102; Name=EY650102; organism=Citrus sinensis; type=EST; length=931bp
CCCACGCGTCCGTGACGGCGAATATGGGGGGGGGGGGTGTGTTGATCCAT
ATACGCCCTTGGGTGAGAAAAAGAGGATGTCTAAGCAAATGGCCAAGGAG
TATAATCCAAGCTCTGTTGAGAAGTCGTGGTATTCGTGGTGGGAGAACTC
TGGATATTTCATTGCAGATAACAAGATCTCGAAGCCATGCGGGGTGATTG
TTCTACCCCCACCAAATGTGACTGGTGCCCTACATATAGGACATGCCCTC
ACAACAGCCATACAGGATACAATTATACGTTGGAGGAGAATGTCTGGATA
TAATGCCTTGTGGGTACCTGGCATGGACCATGCTGGGATTGCAACACAGG
TGGTTGTAGAGAAGAAGCTAATGCGTGAAAGGAAATTAACTAGGCATGAC
ATTGGCCGTGAGCAATTTGTATCTGAGGTTTGGAAGTGGAAGGATGAGTA
TGGGGGTACCATATTAAGACAGCAACGTCGGGTAGGTGCTTCTCTTGACT
GGTCCCGTGAGTGCTTTACGATGGATGAAAAAAGGTCAAAGGCCGTGACA
GAGGCATTTGTTCGGCTTACAAAGAGGGTCTCATATATAGGGATCTTCGG
CTAGTAAACTGGGATTGGGTCTTACGGACAGCTATATGCTGTATTGGAAG
GGATAACGTTGACCTCCCATAAAGGGAGATGAGAAACCTTCCTGGGTATG
ATAAACAAGGGGAATTTGGGGGGTTAACATCATGTGGCGATCCCCTGGAA
GGAAGACTTGGGGGAATTGTGGGCGCCCTCCTAGGGGGGAACATTGTTGG
GGACACTCCCTTGGTTACTCCGGAGGAGCAGGGACCGGCTCGGGTGGAAG
TGGCGCTTCTACTTGATGGAGAAAAATCCTAATTGTGATGCATCCTGGGG
ACCCCAATTTGGACGGGGCCGTTAATAACAC