EY650097

Overview
NameEY650097
Unique NameEY650097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.470e-67
Identity = 125/179 (69.83%), Postives = 146/179 (81.56%), Query Frame = 3
Query:   45 MISSAT----VATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 569
            M SSAT    VATA   + AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA  V+KE  E  KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:    1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.508e-67
Identity = 125/179 (69.83%), Postives = 146/179 (81.56%), Query Frame = 3
Query:   45 MISSAT----VATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 569
            M SSAT    VATA  A+ AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCT A  V+KE  E  KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:    1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.275e-67
Identity = 117/168 (69.64%), Postives = 144/168 (85.71%), Query Frame = 3
Query:   72 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 575
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ASNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+  V+KE  E  KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.275e-67
Identity = 123/177 (69.49%), Postives = 147/177 (83.05%), Query Frame = 3
Query:   39 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 569
            S+M+SS  VATA  A+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA  V+KE  E  KEYP +F+R+IGFDN RQVQC+SFI  +P
Sbjct:    5 STMLSS--VATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.296e-67
Identity = 116/168 (69.05%), Postives = 143/168 (85.12%), Query Frame = 3
Query:   72 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 575
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+  V+KE  E  KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.529e-67
Identity = 121/177 (68.36%), Postives = 144/177 (81.36%), Query Frame = 3
Query:   39 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 569
            S M S+A VA   RA  AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+ V+ E  E  K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:    4 SMMASTAAVA---RAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.245e-66
Identity = 116/168 (69.05%), Postives = 143/168 (85.12%), Query Frame = 3
Query:   72 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 575
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+  V+KE  E  KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.245e-66
Identity = 116/168 (69.05%), Postives = 143/168 (85.12%), Query Frame = 3
Query:   72 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 575
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+  V+KE  E  KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    6 ATVATVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.797e-65
Identity = 114/166 (68.67%), Postives = 141/166 (84.94%), Query Frame = 3
Query:   72 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 569
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+  V+KE  E  KEYP +++RIIGFDN RQVQCISFIA+KP
Sbjct:    6 ATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.066e-65
Identity = 120/179 (67.04%), Postives = 142/179 (79.33%), Query Frame = 3
Query:   33 VGSSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 569
            + SSM++S   A A RA  AQ +MV PF   +SS  FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+ V+ E  E  K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:    1 MASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of EY650097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS2_FRIAG1.470e-6769.83Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_FRIAG2.508e-6769.83Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS7_FLAPR3.275e-6769.64Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS1_FRIAG3.275e-6769.49Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS3_FLAPR7.296e-6769.05Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_LEMGI9.529e-6768.36Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS5_FLAPR1.245e-6669.05Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_FLAPR1.245e-6669.05Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_FLAPR1.797e-6568.67Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS4_LEMGI3.066e-6567.04Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-B10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650097 ID=EY650097; Name=EY650097; organism=Citrus sinensis; type=EST; length=897bp
ACTTGCAAAGCTANAAGAAGGAGCAAGGGCGCGTGGGGTCCTCAATGATC
TCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAG
CATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAA
CCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGA
GTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGAC
TCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCA
ATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAG
AAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGG
ACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAA
CCCANGTTTTGAAGGAGGGTGGGGAGGTGCANAAGGAATACCCACATTCA
TTCGTCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAG
TTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTG
TAACCACCCATGCAATATTGGTGATTATTATTATGTGTAACCCCCATAAT
GATCATTCGATCATGGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCT
GCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTNC
TTTTTTTTTTTTTATATATATTNTATAATTNGATCCTTTGGTTTCAGTTC
ATTAATCTGGGTCTCGATGTTCANTTAATGAGTGAGAATACTGGATNAAA
AGATANTTTATGATTCTGGCAAAAAAAAAAAAGGCGGCGTCTATAGA
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