EY650097

Overview
NameEY650097
Unique NameEY650097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.452e-31
Identity = 76/179 (42.46%), Postives = 100/179 (55.87%), Query Frame = 3
Query:   51 SSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 569
            SS + A A  A     S V P   LK     PA K       + A+       M VW P   K FET SYLPPLSDE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D   VL+E     K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:    8 SSVSAAVARPAR----SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.100e-30
Identity = 75/179 (41.90%), Postives = 100/179 (55.87%), Query Frame = 3
Query:   51 SSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 569
            SS + A A  A     S V P   LK     PA K       + A+       M VW P   K FET SYLPPL+DE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D   VL+E     K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:    8 SSVSAAVARPAR----SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.452e-30
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 3
Query:  342 ELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 572
            ELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+  VLKE  E  KEYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.202e-30
Identity = 56/125 (44.80%), Postives = 82/125 (65.60%), Query Frame = 3
Query:  213 KVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE------LEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKP 569
            KVW P   K++ET SYLPPL+++ + ++++Y+I +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD + VL+E       +P+ ++R++ FDN +QVQC+ F+  +P
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.038e-29
Identity = 65/152 (42.76%), Postives = 88/152 (57.89%), Query Frame = 3
Query:  141 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 572
            FP   K N      ASN    +C  M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD + VL E     K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.112e-28
Identity = 64/157 (40.76%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  120 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 572
            G    SA P          + A N  R   M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD + VL E     K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.676e-28
Identity = 66/171 (38.60%), Postives = 94/171 (54.97%), Query Frame = 3
Query:   81 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITS-IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 572
            A++   ++V    G   SS+ P          S +A    R   M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD + VL E     K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:    3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.943e-27
Identity = 57/127 (44.88%), Postives = 80/127 (62.99%), Query Frame = 3
Query:  210 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 572
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD + VL E     K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.313e-27
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  210 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 572
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD + VL +     K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170          
BLAST of EY650097 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.327e-27
Identity = 57/127 (44.88%), Postives = 80/127 (62.99%), Query Frame = 3
Query:  210 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATXVLKEGGEVXKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 572
            M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+ VL E     K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
The following BLAST results are available for this feature:
BLAST of EY650097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS2_CHLRE6.452e-3142.46Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE1.100e-3041.90Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_SINAL2.452e-3075.32Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS_CHLMO3.202e-3044.80Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_ACECL6.038e-2942.76Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACECL5.112e-2840.76Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS5_ACECL6.676e-2838.60Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_ACECL1.943e-2744.88Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS7_ACECL3.313e-2744.09Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS3_ACEAT4.327e-2744.88Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-B10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650097 ID=EY650097; Name=EY650097; organism=Citrus sinensis; type=EST; length=897bp
ACTTGCAAAGCTANAAGAAGGAGCAAGGGCGCGTGGGGTCCTCAATGATC
TCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAG
CATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAA
CCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGA
GTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGAC
TCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCA
ATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAG
AAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGG
ACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAA
CCCANGTTTTGAAGGAGGGTGGGGAGGTGCANAAGGAATACCCACATTCA
TTCGTCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAG
TTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTG
TAACCACCCATGCAATATTGGTGATTATTATTATGTGTAACCCCCATAAT
GATCATTCGATCATGGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCT
GCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTNC
TTTTTTTTTTTTTATATATATTNTATAATTNGATCCTTTGGTTTCAGTTC
ATTAATCTGGGTCTCGATGTTCANTTAATGAGTGAGAATACTGGATNAAA
AGATANTTTATGATTCTGGCAAAAAAAAAAAAGGCGGCGTCTATAGA
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