EY650060

Overview
NameEY650060
Unique NameEY650060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_SERMA (Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.998e-37
Identity = 81/155 (52.26%), Postives = 106/155 (68.39%), Query Frame = 1
Query:  268 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            +++PSILSA+FA+LGE    V  AG D +H DVMD  +VPN+TIGP+V +ALR      P+DVHLM+   ++ VPDF KAGA  +S H E S   H+ RT+  IK+ G KAG+V NPAT LS ++ V+D  D+ L+MSVNPGFGGQ  I   + K
Sbjct:    5 LIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITAPIDVHLMVKPVDRIVPDFAKAGASYISFHPEASE--HVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDK 157          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_SHIFL (Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.184e-36
Identity = 79/155 (50.97%), Postives = 105/155 (67.74%), Query Frame = 1
Query:  268 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D  D+ L+MSVNPGFGGQ  I   + K
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDK 157          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_HAEIN (Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae GN=rpe PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.184e-36
Identity = 79/157 (50.32%), Postives = 107/157 (68.15%), Query Frame = 1
Query:  268 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKKSQ 735
            +++PSILSA+ A+LG+ V+ V  AG D IH DVMD  +VPN+T GP V  ALR      P+DVHLM+   ++ +PDF KAGA+ ++ H E S   H+ R+L  I+D G K+G+V NPA  LS ++ VLD  D+ L+MSVNPGFGGQ  I + +KK Q
Sbjct:    5 LIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSE--HIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQ 159          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_ECOLI (Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=rpe PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.184e-36
Identity = 79/155 (50.97%), Postives = 105/155 (67.74%), Query Frame = 1
Query:  268 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D  D+ L+MSVNPGFGGQ  I   + K
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDK 157          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_ECOL6 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O6 GN=rpe PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.184e-36
Identity = 79/155 (50.97%), Postives = 105/155 (67.74%), Query Frame = 1
Query:  268 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D  D+ L+MSVNPGFGGQ  I   + K
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDK 157          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_ECO57 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.184e-36
Identity = 79/155 (50.97%), Postives = 105/155 (67.74%), Query Frame = 1
Query:  268 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D  D+ L+MSVNPGFGGQ  I   + K
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDK 157          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_BUCAI (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.843e-36
Identity = 75/154 (48.70%), Postives = 107/154 (69.48%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            ++PSILSA+FA+LGE +K V  AG D IH DVMD  +VPN+++GP+++++LR      P+DVHLM+   +  +P F KAGA  ++ H E  +T+H+ RTLN IK+ G KAG+  NPAT L+ ++ +L+  DL L+MSVNPGFG Q  + S   K
Sbjct:    6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPIDVHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPATPLNFLDYILEKLDLILLMSVNPGFGNQSFLPSTFNK 157          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_RHORU (Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.715e-34
Identity = 76/155 (49.03%), Postives = 103/155 (66.45%), Query Frame = 1
Query:  265 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            I ++PS+LSA+FA    +  +    G D +H DVMD  +VPN+T+GPLV  ALRP T LP+DVHLM    +  +  F +AGAD+++ H E S   H+HR++  I+  G KAGV LNPA+ LS ++ +L+  DL LIMSVNPGFGGQ  I S + K
Sbjct:    5 IRIAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPHTSLPIDVHLMTRPVDPLIDSFAEAGADMITFHPEASD--HVHRSVQMIRKRGLKAGVALNPASPLSLLDHILEDLDLVLIMSVNPGFGGQSFIPSALPK 157          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_TREPA (Ribulose-phosphate 3-epimerase OS=Treponema pallidum GN=rpe PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.007e-33
Identity = 68/153 (44.44%), Postives = 100/153 (65.36%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            ++PS+LSA+F+ L   +  +E  G  W+H+DVMDG FVPN+T G  V+  LR  T LP DVHLM+  P   + DF++AGAD ++ H E  + +H HR ++ I+  G K G+ L P+T ++A+  VL   DL L+M+VNPGF GQ++I   + K
Sbjct:    7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLPFDVHLMVSRPADLIEDFVQAGADFLTFHIE--AEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPFVDLVLVMTVNPGFSGQQMIAHCLSK 157          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_STRCO (Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor GN=rpe PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.541e-32
Identity = 72/160 (45.00%), Postives = 104/160 (65.00%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKKSQT*EEM 750
            ++PSILSA+FA+L ++ KAVE  G DW+HVDVMD  FVPN+T+G  VV++L   TD PLD HLMI  P++  P +++AGA  V+ H E ++     R   +I+  GA+A + L PAT +   E +L   D+ LIM+V PGFGGQ  ++  + K +   E+
Sbjct:    5 INPSILSADFARLADEAKAVE--GADWLHVDVMDNHFVPNLTLGVPVVESLARATDTPLDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAA--PVRLAREIRAKGARASMALKPATPVEPYEDLLPELDMLLIMTVEPGFGGQAFLDIMLPKIRRTREL 160          
The following BLAST results are available for this feature:
BLAST of EY650060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_SERMA7.998e-3752.26Ribulose-phosphate 3-epimerase OS=Serratia marcesc... [more]
RPE_SHIFL5.184e-3650.97Ribulose-phosphate 3-epimerase OS=Shigella flexner... [more]
RPE_HAEIN5.184e-3650.32Ribulose-phosphate 3-epimerase OS=Haemophilus infl... [more]
RPE_ECOLI5.184e-3650.97Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECOL65.184e-3650.97Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECO575.184e-3650.97Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_BUCAI8.843e-3648.70Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_RHORU3.715e-3449.03Ribulose-phosphate 3-epimerase OS=Rhodospirillum r... [more]
RPE_TREPA7.007e-3344.44Ribulose-phosphate 3-epimerase OS=Treponema pallid... [more]
RPE_STRCO4.541e-3245.00Ribulose-phosphate 3-epimerase OS=Streptomyces coe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-G04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650060 ID=EY650060; Name=EY650060; organism=Citrus sinensis; type=EST; length=905bp
AAACGAACGAAAACAGATACCATATTTCCTCTCACTAGCCATAACCAAAC
CAACAGTTACGTTTTATAGAGAGAAACAAAAAAAAGCGTCAAGATGTCTA
CAGGCTCGCTGTGTTCATCAACGACTCATATCAATGGCTTTACAGGTGGT
TTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTTTTAC
AAGGGGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGATAAGT
TCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTC
GCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTG
GATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACAATTG
GACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTTGGAT
GTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTATCAA
GGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACCATTC
ATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGCTGGA
GTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCCTTGA
TGTGGNTGATCTTTGTCTGATCATGTCNGTGAACCCTGGCTTTGGTGGGC
AAAGGCTTATTGAGAGCCAAGTAAAAAAATCTCAGACTTGAGAAGAAATG
TGTTAGAGGAGGGAGTAAACCCATGATTGAATANATGGGGNAGTAGGTCC
NAAAATGCATATANGGTATTGAAGCTGCGCTATGCCNTGGTTGCTGGTCA
NCTGTCTTTGAGCTAAGATATGCTGAACTTTAAGGGATAAACCANCAAAG
CACAG
back to top