EY650060

Overview
NameEY650060
Unique NameEY650060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_METJA (Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii GN=rpe PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.724e-26
Identity = 67/155 (43.23%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  265 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            I +  SILSA+F  L E++K  E AG D+ HVD+MDG FVPNI++G  +   ++ +T+LP++VHLM+   +  V +F +   D ++ H E  +     R +N+IK +GAK  V LNPAT L AIE +L      L+M+V PGF GQ+ I    KK
Sbjct:    2 IKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE--MDYITFHIE--AVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKK 152          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE1_ORYSJ (Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.485e-24
Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---XDLCLIMSVNPGFGGQRLIESQVKK 729
            ++PS+LS++FA L  +   +   G DW+H+D+MDG FVPN+TIG  V+ +LR  T   LD HLM+  P   V    KAGA   + H E S   +    +  IK  G + GV L P T +  +  +++     +L L+M+V PGFGGQ+ +   ++K
Sbjct:    9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEK 163          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_CANGA (Ribulose-phosphate 3-epimerase OS=Candida glabrata GN=RPE1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.552e-24
Identity = 63/170 (37.06%), Postives = 93/170 (54.71%), Query Frame = 1
Query:  268 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP----------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            I++PSIL+++FA LG +   V  +G +W+H+DVMDG FVPNIT+G  +V +LR                       D H+M+ EPE+ V DF KAGAD  + H E  +T      +  IK+ G KA   + P T +  +  +    D+ L+M+V PGFGGQ+ +   + K
Sbjct:    5 IIAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVPRSQEEEKASGEVARPTAFFDCHMMVEEPEKWVADFAKAGADQFTFHYE--ATKDPLSLVKLIKENGIKAACAIKPGTPVDVLFELAPYLDMALVMTVEPGFGGQKFMPDMMPK 172          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_ASHGO (Ribulose-phosphate 3-epimerase OS=Ashbya gossypii GN=RPE1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.259e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  268 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--------TDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            I++PSIL+++FA L      V  AG +W+H+DVMDG FVPNIT+GP +V +LR          +D P    D H+M+ EPE+ V  F++ GAD  + H E  +T +    +  IK  G +A   + P T +  +  +    D+ L+M+V PGFGGQ+ +   + K
Sbjct:    5 IIAPSILASDFANLECGCHRVINAGAEWLHIDVMDGHFVPNITLGPPIVKSLRKAVPRVGDKESDKPKAFFDCHMMVAEPEKWVDVFVENGADQFTFHYE--ATKNPLELVKLIKSRGIRAACAIKPDTPVDVLFELAPYLDMALVMTVEPGFGGQKFMPDMMPK 167          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: ALSE_ECOLI (D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=alsE PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.259e-23
Identity = 51/153 (33.33%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            +SPS++  +  K  EQ++ ++ +  D+ H+D+MDG FVPN+T+ P  V  ++ +   PLD HLM+  P+  +    +AGAD +++H E  +     R +++I+    K G++LNP T + A++  +   D   +M+V+PGF GQ  I   + K
Sbjct:    3 ISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING-QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDK 153          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_PONAB (Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.573e-23
Identity = 59/155 (38.06%), Postives = 93/155 (60.00%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P TS+  +    +  D+ L+M+V PGFGGQ+ +E  + K
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYAFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPK 159          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_HUMAN (Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.573e-23
Identity = 59/155 (38.06%), Postives = 93/155 (60.00%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P TS+  +    +  D+ L+M+V PGFGGQ+ +E  + K
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPK 159          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_MOUSE (Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 58/155 (37.42%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+  PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P T++  +    +  D+ L+M+V PGFGGQ+ +E  + K
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPK 159          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: RPE_SCHPO (Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe GN=SPAC31G5.05c PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 57/156 (36.54%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  271 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR---PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKK 729
            ++PS+L+ +FA L ++V  +   G DW+HVDVMD +FVPN+TIGP+VV A+R      +   D HLM++EPE+ +     AGA +   H E  +T      +++  + G   G  L P T +  I   ++  D+ L+M+V PG GGQ  +   + K
Sbjct:    6 IAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYE--ATEKHEEIISRAHEKGMLVGCALKPKTPVEVILPFVEKLDMVLVMTVEPGKGGQSFMPECLPK 159          
BLAST of EY650060 vs. ExPASy Swiss-Prot
Match: SGCE_ECOLI (Protein sgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.045e-15
Identity = 50/157 (31.85%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  265 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVXDLCLIMSVNPGFGGQRLIESQVKKSQ 735
            +I+ PS+ SAN    G ++ A++      +H+D+ D  F+ NIT G   V A+   T  PL  H M+  P++      +     + VH E  +  +   TL +I+  GA+AG+V NPAT + A   +    D  ++M+  P   GQR I S  +K Q
Sbjct:    1 MILHPSLASANPLHYGRELTALDNLDFGSLHLDIEDSSFINNITFGMKTVQAVARQTPHPLSFHFMLARPQRWFNALAEIRPAWIFVHAE--TLDYPSETLTEIRHTGARAGLVFNPATPIDAWRYLASELDGVMVMTSEPDGQGQRFIPSMCEKIQ 155          
The following BLAST results are available for this feature:
BLAST of EY650060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_METJA3.724e-2643.23Ribulose-phosphate 3-epimerase OS=Methanocaldococc... [more]
RPE1_ORYSJ3.485e-2437.82Ribulose-phosphate 3-epimerase, cytoplasmic isofor... [more]
RPE_CANGA4.552e-2437.06Ribulose-phosphate 3-epimerase OS=Candida glabrata... [more]
RPE_ASHGO2.259e-2337.58Ribulose-phosphate 3-epimerase OS=Ashbya gossypii ... [more]
ALSE_ECOLI2.259e-2333.33D-allulose-6-phosphate 3-epimerase OS=Escherichia ... [more]
RPE_PONAB6.573e-2338.06Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=... [more]
RPE_HUMAN6.573e-2338.06Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=... [more]
RPE_MOUSE1.912e-2237.42Ribulose-phosphate 3-epimerase OS=Mus musculus GN=... [more]
RPE_SCHPO2.498e-2236.54Ribulose-phosphate 3-epimerase OS=Schizosaccharomy... [more]
SGCE_ECOLI5.045e-1531.85Protein sgcE OS=Escherichia coli (strain K12) GN=s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-G04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650060 ID=EY650060; Name=EY650060; organism=Citrus sinensis; type=EST; length=905bp
AAACGAACGAAAACAGATACCATATTTCCTCTCACTAGCCATAACCAAAC
CAACAGTTACGTTTTATAGAGAGAAACAAAAAAAAGCGTCAAGATGTCTA
CAGGCTCGCTGTGTTCATCAACGACTCATATCAATGGCTTTACAGGTGGT
TTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTTTTAC
AAGGGGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGATAAGT
TCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTC
GCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTG
GATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACAATTG
GACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTTGGAT
GTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTATCAA
GGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACCATTC
ATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGCTGGA
GTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCCTTGA
TGTGGNTGATCTTTGTCTGATCATGTCNGTGAACCCTGGCTTTGGTGGGC
AAAGGCTTATTGAGAGCCAAGTAAAAAAATCTCAGACTTGAGAAGAAATG
TGTTAGAGGAGGGAGTAAACCCATGATTGAATANATGGGGNAGTAGGTCC
NAAAATGCATATANGGTATTGAAGCTGCGCTATGCCNTGGTTGCTGGTCA
NCTGTCTTTGAGCTAAGATATGCTGAACTTTAAGGGATAAACCANCAAAG
CACAG
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