EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:12..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROMS (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601) GN=rplA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.022e-44
Identity = 85/140 (60.71%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            L G +DL+E I  G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP GAKG YWK+ Y+ S+MGPS++L+I  + DY+
Sbjct:   93 LFGEEDLVESINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQLDINAVQDYQ 232          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            L G +DL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT++I  AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L  N     +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I  + DY+
Sbjct:   93 LFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTSDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINALQDYQ 232          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 85/140 (60.71%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            L G +DL+E I  G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP GAKG YWKS Y+ S+MGPS++++I  + DY+
Sbjct:   93 LFGEEDLVESINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIGNAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFENLKTLQESIDKNKPSGAKGKYWKSFYVTSTMGPSVQVDINAVQDYQ 232          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.733e-44
Identity = 85/138 (61.59%), Postives = 106/138 (76.81%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            L G DDL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI+EFK GK+E+RAD+ GIVH+ FGKA FS D LL N     ++I+ NKP GAKG YWKS YI S+MGPS+ +++  + D
Sbjct:   93 LAGDDDLVESIGKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGIVHVRFGKASFSADALLENLKTLQETIDRNKPSGAKGRYWKSLYITSTMGPSVEVDVTALQD 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROM3 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplA PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.733e-44
Identity = 85/138 (61.59%), Postives = 106/138 (76.81%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            L G DDL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI+EFK GK+E+RAD+ GIVH+ FGKA FS D LL N     ++I+ NKP GAKG YWKS YI S+MGPS+ +++  + D
Sbjct:   93 LAGDDDLVESIGKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGIVHVRFGKASFSADALLENLKTLQETIDRNKPSGAKGRYWKSLYITSTMGPSVEVDVTALQD 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.733e-44
Identity = 84/140 (60.00%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            L G +DL+E I  G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I  + DY+
Sbjct:   93 LFGEEDLVESINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINAVQDYQ 232          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.793e-44
Identity = 84/138 (60.87%), Postives = 106/138 (76.81%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            L G +DL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI+EFK GK+E+RAD+TGIVH+ FGKA FS D LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++   + D
Sbjct:   93 LAGEEDLVESISKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEAAIKEFKAGKLEFRADRTGIVHVRFGKASFSADALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.793e-44
Identity = 78/141 (55.32%), Postives = 114/141 (80.85%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 435
            +VG ++LI++I+ G M+F+ LIA+PDMM KVA LG++LGPRGLMP+PK GTVTT++  AI+EFK GK E+RAD+TGIVH+ FGKA F+ +DLL+N  A  ++I+ N+P GAKG YW++ ++ +SMGPSI++++  + D K+
Sbjct:   95 IVGSEELIDEIQNGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMPSPKGGTVTTDLAAAIQEFKAGKQEFRADRTGIVHVMFGKASFTAEDLLVNLKALQETIDRNRPSGAKGRYWRTVFVSASMGPSIQVDVNSLRDLKV 235          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.793e-44
Identity = 84/141 (59.57%), Postives = 111/141 (78.72%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 435
            +VG ++LI +I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP+PKAGTVT ++PQAIEEFK GK+E+RAD+TGIVH+ FGKA FS  DLL N  A   +I+ N+P GAKG YW+S Y+ ++MGPSI ++I  + D  L
Sbjct:   94 VVGSEELITEIQQGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIEEFKAGKLEFRADRTGIVHVMFGKAKFSAQDLLENLKALQDTIDRNRPSGAKGRYWRSLYVSATMGPSIEVDISSLRDLNL 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.148e-43
Identity = 84/140 (60.00%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            L G +DL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L  N     +SI+ NKP GAKG YW+S Y+ S+MGPS++++I  + DY+
Sbjct:   93 LFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTGDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWRSFYLTSTMGPSVQVDINALQDYQ 232          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PROMS3.022e-4460.7150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM53.947e-4460.0050S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM23.947e-4460.7150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROMM6.733e-4461.5950S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM36.733e-4461.5950S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM06.733e-4460.0050S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNSC8.793e-4460.8750S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_CYAP78.793e-4455.3250S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_ACAM18.793e-4459.5750S ribosomal protein L1 OS=Acaryochloris marina (... [more]
RL1_PROMP1.148e-4360.0050S ribosomal protein L1 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
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