EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ACIC5 (50S ribosomal protein L1 OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rplA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 68/133 (51.13%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   13 LVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            +VGG++L+E+I K  + +FD LIA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++  A++E K GK+EYR DKT +VH+P GK  F  + L+ N +  + S+   KP  AKG Y K   + S+MGP I L+
Sbjct:   94 IVGGEELVEKIQKESWTDFDALIATPDMMRSVGRLGKVLGPRGLMPNPKTGTVTNDVAAAVKEIKAGKIEYRTDKTALVHVPVGKLSFPAEKLIDNAMTVITSVVRAKPSAAKGKYIKGITLSSTMGPGIPLD 226          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SULSY (50S ribosomal protein L1 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 68/135 (50.37%), Postives = 98/135 (72.59%), Query Frame = 1
Query:   19 GGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            GG+++I +I    +++FD +IA+PDMM K+A LGKILGPRGLMPNPK GTVTT++ +A+ E KKG+VE++ DKTG +H+P GK  F +  L  N LA V ++   KP GAKG Y ++  + ++M PS++LN  E+
Sbjct:   99 GGEEIINKIANENWIDFDIVIATPDMMPKLAKLGKILGPRGLMPNPKVGTVTTDVKRAVTEAKKGRVEFKVDKTGNLHVPVGKISFEDHKLKENILAVVDAVLKAKPPGAKGQYIRNVVLKTTMSPSVKLNPAEL 233          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SORC5 (50S ribosomal protein L1 OS=Sorangium cellulosum (strain So ce56) GN=rplA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 67/131 (51.15%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG  DL+ +++ GFM+FD++IA+PDMM  V  LG+ILGPRGLMPNPK GTVT ++  A+ E K GKVEYR +K GIVH   GK  F+E+ L +N  A ++++   KP  AKG+Y +S  + S+MGP +R++
Sbjct:   95 VGEADLVNKVQEGFMDFDRVIATPDMMGLVGKLGRILGPRGLMPNPKVGTVTFDVKTAVSEAKAGKVEYRVEKAGIVHARIGKVSFAENALHVNADALIQALVRAKPATAKGIYLRSITMSSTMGPGVRID 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_MYXXD (50S ribosomal protein L1 OS=Myxococcus xanthus (strain DK 1622) GN=rplA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL ++I+ GF++FD +IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++ +AI + K GKV++RA+K GIVH   GK+ F  + L  NF A V  +   KP  AKGVY +   I SSMGP I+L+  E+
Sbjct:   97 VVGAEDLQKRIEEGFLDFDTVIATPDMMGVVGRLGKVLGPRGLMPNPKVGTVTMDVAKAIRDAKGGKVDFRAEKAGIVHAKLGKSSFEVEKLEANFNALVDLVMKLKPAAAKGVYLQGIAISSSMGPGIKLDTMEI 232          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_LEPBP (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rplA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 65/137 (47.45%), Postives = 98/137 (71.53%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            VG  DLIE++ GG+ +FD  +A+PDMM +V  LG +LG +GLMP PKAGTVTT++ +A++E K G++EYR DK G+VH+  GK  FS+D L  N  A V ++  +KP  AKG Y KS  + ++MG  +++++KE+++
Sbjct:   91 VGDMDLIEKVSGGWTDFDACVATPDMMKEVGKLGPVLGRKGLMPKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_LEPBA (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 65/137 (47.45%), Postives = 98/137 (71.53%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            VG  DLIE++ GG+ +FD  +A+PDMM +V  LG +LG +GLMP PKAGTVTT++ +A++E K G++EYR DK G+VH+  GK  FS+D L  N  A V ++  +KP  AKG Y KS  + ++MG  +++++KE+++
Sbjct:   91 VGDMDLIEKVSGGWTDFDACVATPDMMKEVGKLGPVLGRKGLMPKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_THEPX (50S ribosomal protein L1 OS=Thermoanaerobacter sp. (strain X514) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.094e-33
Identity = 66/132 (50.00%), Postives = 96/132 (72.73%), Query Frame = 1
Query:   16 VGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG ++L+ +I+   + ++D ++A+PDMM  V  LGKILGP+GLMPNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK  F ++ LL NF A + +I  +KP  AKG Y KS  + S+MGP +++N
Sbjct:   94 VGAEELVAKIQNENWFDYDVVVATPDMMGVVGRLGKILGPKGLMPNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSVVLSSTMGPGVKVN 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_THEP3 (50S ribosomal protein L1 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.094e-33
Identity = 66/132 (50.00%), Postives = 96/132 (72.73%), Query Frame = 1
Query:   16 VGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG ++L+ +I+   + ++D ++A+PDMM  V  LGKILGP+GLMPNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK  F ++ LL NF A + +I  +KP  AKG Y KS  + S+MGP +++N
Sbjct:   94 VGAEELVAKIQNENWFDYDVVVATPDMMGAVGRLGKILGPKGLMPNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSLVLSSTMGPGVKVN 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_RICAE (50S ribosomal protein L1 OS=Rickettsia africae (strain ESF-5) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.094e-33
Identity = 67/133 (50.38%), Postives = 95/133 (71.43%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 411
            LVG  ++I++IK G + FD  IA+PDMMV + S+ +ILGP+GLMPNPK GTVT +I  AI+  K G+VEYRA+K GI+H   GK  FS+ DLL N  A ++++   KP G KG Y K+ Y+ S+MG S+++++
Sbjct:  103 LVGSTNIIDEIKAGKINFDVCIATPDMMVAIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGSYLKAMYLSSTMGASVQIDL 235          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DESOH (50S ribosomal protein L1 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.094e-33
Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG D+LIE IK G+  FDK +A+PDMM  V  +GK+LGPRGLMPN K GTVT ++ +A+ + K GK+++R DK GIVH P GKA F  + L  N LA ++ + A KP  +KG Y +S  + +SMG  +RL+
Sbjct:   95 VGNDELIEDIKNGWFGFDKAVATPDMMGAVGKIGKLLGPRGLMPNAKTGTVTFDVARAVNDLKAGKIDFRVDKAGIVHAPLGKASFGTEKLQDNMLALLRMLVAMKPATSKGAYMRSLAVSTSMGAGVRLD 225          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_ACIC52.400e-3351.1350S ribosomal protein L1 OS=Acidobacterium capsula... [more]
RL1_SULSY3.135e-3350.3750S ribosomal protein L1 OS=Sulfurihydrogenibium s... [more]
RL1_SORC53.135e-3351.1550S ribosomal protein L1 OS=Sorangium cellulosum (... [more]
RL1_MYXXD3.135e-3352.2150S ribosomal protein L1 OS=Myxococcus xanthus (st... [more]
RL1_LEPBP3.135e-3347.4550S ribosomal protein L1 OS=Leptospira biflexa ser... [more]
RL1_LEPBA3.135e-3347.4550S ribosomal protein L1 OS=Leptospira biflexa ser... [more]
RL1_THEPX4.094e-3350.0050S ribosomal protein L1 OS=Thermoanaerobacter sp.... [more]
RL1_THEP34.094e-3350.0050S ribosomal protein L1 OS=Thermoanaerobacter pse... [more]
RL1_RICAE4.094e-3350.3850S ribosomal protein L1 OS=Rickettsia africae (st... [more]
RL1_DESOH4.094e-3350.3850S ribosomal protein L1 OS=Desulfococcus oleovora... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
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