EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:12..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.148e-43
Identity = 81/134 (60.45%), Postives = 112/134 (83.58%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 414
            +VGG+DLI++IK G ++FDKLIA+PDMM+ +A LGKILGP+GLMP+PKAGTVT N+   I+EFK GK+EY+ D++GI+HIPFGK +F+ +DL IN +   +SI+ N+P+G+KG YWKS +I S+MGPSI L+I+
Sbjct:   94 IVGGEDLIDEIKKGRLDFDKLIATPDMMMSIAKLGKILGPKGLMPSPKAGTVTHNLITTIKEFKAGKLEYKIDRSGILHIPFGKLNFNVEDLHINLITLQESIDRNRPQGSKGKYWKSVHINSTMGPSIPLDIQ 227          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.500e-43
Identity = 83/140 (59.29%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            L G +DL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP G+KG YWKS Y+ S+MGPS++++I  + DY+
Sbjct:   93 LFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGSKGKYWKSFYVTSTMGPSVQVDISAVQDYQ 232          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.558e-43
Identity = 82/141 (58.16%), Postives = 110/141 (78.01%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 435
            + G ++LIE+I  GF++FD LIA+PD+M +VA LG+ LGPRGLMP+PK GTVT ++ QAI EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N  A  ++I+ N+P GAKG YW+S YI ++MGP+I ++I  + D KL
Sbjct:   94 IAGSEELIEEISKGFLDFDLLIATPDVMPQVAKLGRQLGPRGLMPSPKGGTVTFDLEQAINEFKAGKLEFRADRTGIVHVLFGKASFSADDLLANLKALQETIDRNRPSGAKGRYWRSVYISATMGPAIEVDINALRDLKL 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.342e-43
Identity = 81/144 (56.25%), Postives = 109/144 (75.69%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 444
            + G ++LIE+I+ G M+FD LIA+PDMM K+A LGK LGPRGLMP+PK GTVT ++  A+ EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N  A  ++I+ N+P GAKG +W++ ++ SSMGPSI ++I  + D K   N
Sbjct:   95 IAGSEELIEEIQKGMMDFDVLIATPDMMPKIARLGKQLGPRGLMPSPKGGTVTADLAAAVNEFKAGKLEFRADRTGIVHVMFGKASFSADDLLANLKALQETIDRNRPSGAKGRFWRTVFVSSSMGPSIPVDINALRDLKFEDN 238          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.364e-43
Identity = 79/141 (56.03%), Postives = 111/141 (78.72%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 435
            L G ++LIEQI  G MEFD+LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ +AI+EFK GK+E+RAD++GIVH+ FGK  FS +DLLIN  A  + I+ N+P GAKG YW++ ++ ++MGPSI +++  + D KL
Sbjct:   94 LAGSEELIEQISKGMMEFDRLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTFDLTKAIDEFKAGKLEFRADRSGIVHVMFGKTSFSVEDLLINLKALQECIDRNRPSGAKGRYWRTIFVSATMGPSIEIDVSSLQDLKL 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.700e-43
Identity = 81/141 (57.45%), Postives = 110/141 (78.01%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 435
            + G ++LIE+I  GF++FD LIA+PD+M +VA LG+ LGPRGLMP+PK GTVT ++ QA+ EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N  A  ++I+ N+P GAKG YW+S YI ++MGP+I ++I  + D KL
Sbjct:   94 IAGSEELIEEISKGFLDFDLLIATPDVMPQVAKLGRQLGPRGLMPSPKGGTVTFDLEQAVNEFKAGKLEFRADRTGIVHVLFGKASFSADDLLANLKALQETIDRNRPSGAKGRYWRSVYISATMGPAIEVDINALRDPKL 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.444e-43
Identity = 83/138 (60.14%), Postives = 106/138 (76.81%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            L G +DL+E I  G M FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++I  + D
Sbjct:   93 LSGDEDLVEAISKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLASAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDIALLQD 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.444e-43
Identity = 83/138 (60.14%), Postives = 106/138 (76.81%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            L G +DL++ I  G M FD LI++PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI+EFK GK+E+RADK GIVH+ FGKA FSE+ LL N      +IE NKP GAKG +W+S +I S+MGPS+ ++I E+ D
Sbjct:   93 LAGEEDLVDSINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGIVHVRFGKASFSEEALLENLKTLQTTIEKNKPSGAKGKFWRSFFITSTMGPSVEVDINELQD 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.444e-43
Identity = 83/138 (60.14%), Postives = 106/138 (76.81%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            L G +DL++ I  G M FD LI++PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI+EFK GK+E+RADK GIVH+ FGKA FSE+ LL N      +IE NKP GAKG +W+S +I S+MGPS+ ++I E+ D
Sbjct:   93 LAGEEDLVDSINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGIVHVRFGKASFSEEALLENLKTLQTTIEKNKPSGAKGKFWRSFFITSTMGPSVEVDINELQD 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.444e-43
Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 435
            +VG ++LIE+I  G M+F+ LIA+PDMM KVA LG++LGPRGLMP+PK GTVT ++  AI EFK GK+E+RAD+TGIVH+ FGKA F+ +DLL N  A  ++++ N+P GAKG YW+S ++ +SMGPSI ++I  + D KL
Sbjct:   95 IVGSEELIEEIFKGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMPSPKGGTVTADLTNAITEFKAGKLEFRADRTGIVHVMFGKASFTPEDLLANLKALQETVDRNRPSGAKGRYWRSVFVSASMGPSIAVDINALRDLKL 235          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_GRATL1.148e-4360.4550S ribosomal protein L1, chloroplastic OS=Gracila... [more]
RL1_PROM91.500e-4359.2950S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNE72.558e-4358.1650S ribosomal protein L1 OS=Synechococcus elongatu... [more]
RL1_SYNY33.342e-4356.2550S ribosomal protein L1 OS=Synechocystis sp. (str... [more]
RL1_TRIEI4.364e-4356.0350S ribosomal protein L1 OS=Trichodesmium erythrae... [more]
RL1_SYNP65.700e-4357.4550S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNS37.444e-4360.1450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROMT7.444e-4360.1450S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM17.444e-4360.1450S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_CYAP87.444e-4356.7450S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
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