EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:12..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.444e-43
Identity = 76/135 (56.30%), Postives = 110/135 (81.48%), Query Frame = 1
Query:   19 GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 423
            G ++LI++I  G ++FDKLIA+PD+M  +A LG++LGPRGLMP+PKAGTVT ++ +A+ EFK GKVEYR D+TGI+H+PFGK+ FS++DL++N     +SI+ NKP GAKG YWK+ ++ S+MGPSI+++I  +L
Sbjct:   95 GSEELIDEILKGRLDFDKLIATPDVMPLIAKLGRVLGPRGLMPSPKAGTVTLDVAKAVNEFKGGKVEYRVDRTGIIHVPFGKSSFSQEDLVLNLQTIKESIDRNKPSGAKGKYWKTFFLSSTMGPSIQIDITSLL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.722e-43
Identity = 83/140 (59.29%), Postives = 107/140 (76.43%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            L G ++LI+ I  G M FD LI++PDMM KVA LG++LGPRGLMPNPKAGTVTT++  +I+EFK GK+E+RAD+ GIVH+ FGKA FS +DLL N     ++I+ NKP GAKG YWKS YI S+MGPS+ ++I  + D K
Sbjct:   93 LAGEEELIDSISKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLISSIKEFKAGKLEFRADRAGIVHVRFGKASFSPEDLLENLKVLHEAIDRNKPSGAKGRYWKSLYITSTMGPSVEIDIAALQDSK 232          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.722e-43
Identity = 82/135 (60.74%), Postives = 104/135 (77.04%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 417
            LVG DDL  QI    + FD LIA+PDMM  +A LGKILGPRGLMP+PK+GTVTTN+ +AI+ F++G++EYR DKTGIVH+ FG+ DF+E  L  N +A  +S+E NKP GA G+YWKS  I +SM PSIRLNI++
Sbjct:   88 LVGSDDLCAQIAQSIINFDCLIATPDMMPTLAKLGKILGPRGLMPSPKSGTVTTNVAEAIQAFRRGQIEYRTDKTGIVHLAFGRMDFNEQHLYDNLVAIKESVETNKPSGASGLYWKSFAIATSMSPSIRLNIQQ 222          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RK1_CYACA (50S ribosomal protein L1, chloroplastic OS=Cyanidium caldarium GN=rpl1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.722e-43
Identity = 77/136 (56.62%), Postives = 108/136 (79.41%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG  DL+E I  GF+EFD+L+ +PDMM  +A +GKILGPRGLMP+PK+G+VT++I  AI+EFKKGK+EYR DK+GIVH   GK DF+ +DLL N +A  KSI+ N+P GAKG YWK+ Y+C++M P+I+++  ++
Sbjct:   95 IVGSKDLVESIANGFLEFDQLLTTPDMMPVIAKVGKILGPRGLMPSPKSGSVTSDIYNAIQEFKKGKLEYRTDKSGIVHSIIGKIDFTAEDLLNNLIAIKKSIDQNRPNGAKGKYWKNMYLCTTMSPAIKIDFNKL 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.658e-42
Identity = 82/138 (59.42%), Postives = 105/138 (76.09%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            L G +DL+E I  G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT ++  AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++   + D
Sbjct:   93 LAGDEDLVETIAKGEMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTIDLAGAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.166e-42
Identity = 81/136 (59.56%), Postives = 104/136 (76.47%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            L G +DL+E I  G M FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI++FK GK+E+RAD+TGIVH+ FGKA F+ D LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++   +
Sbjct:   93 LAGDEDLVEAISKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKDFKAGKLEFRADRTGIVHVRFGKASFTADALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSAL 228          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.825e-42
Identity = 76/135 (56.30%), Postives = 108/135 (80.00%), Query Frame = 1
Query:   19 GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 423
            G ++LI++I  G ++FDKLIA+PD+M  +A LG++LGPRGLMP+PKAGTVT +I ++I EFK GKVEYR D+TGI+H+PFGK+ F E+DL++N      SI+ NKP G+KG YWK+ ++ S+MGPSI+++I  +L
Sbjct:   95 GSEELIDEISKGRLDFDKLIATPDIMPLIAKLGRVLGPRGLMPSPKAGTVTLDITKSINEFKGGKVEYRVDRTGIIHVPFGKSSFPEEDLVMNLQTIKDSIDKNKPSGSKGKYWKTFFLSSTMGPSIQIDITSLL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_GLOVI (50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.075e-41
Identity = 80/141 (56.74%), Postives = 109/141 (77.30%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 435
            + G ++LIE+I+GGFMEFD +IA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++  AI EFK GK+E+RAD+TGIVHIPFGK  F+ + L+ N  +   +I+  KP GAKG YW++ +I S+MGPSI ++I  + D KL
Sbjct:   94 IAGSEELIERIQGGFMEFDLMIATPDIMPQVARLGKLLGPRGLMPSPKGGTVTMDLVGAIREFKAGKLEFRADRTGIVHIPFGKVSFTPEALMDNLKSVQDAIDRAKPSGAKGRYWRTFHIKSTMGPSIEIDINALRDLKL 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RK1_THAPS (50S ribosomal protein L1, chloroplastic OS=Thalassiosira pseudonana GN=rpl1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.075e-41
Identity = 75/133 (56.39%), Postives = 107/133 (80.45%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 411
            +VG  +LI+ I  G + FD L+A+PDMM K+A LG++LGP+GLMP+PK+GTV+TN+ + + +FKKGK EY+ADKTG+VH+ FGKA+FS+D L+ N  +  +SIE N+P G KG Y+KS +IC+SMGPSI+L++
Sbjct:   94 IVGSQELIDDISQGNLNFDLLVATPDMMPKLAKLGRVLGPKGLMPSPKSGTVSTNLTETLSDFKKGKFEYKADKTGVVHVNFGKANFSKDQLMENLTSLYQSIEQNRPSGVKGKYFKSLFICTSMGPSIQLDL 226          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.075e-41
Identity = 80/144 (55.56%), Postives = 110/144 (76.39%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 444
            LVG ++LI++I+ G ++FD LIA+PDMM +VA LG++LGPRGLMP+PK GTVT ++ QAI +FK GK+E+R D+TGIVH+ FGKA+FSE+ LL N  A  ++++ N+P G KG YWKS YI S+M PSI ++   + D KL  N
Sbjct:   93 LVGAEELIDEIQNGRLDFDCLIATPDMMPQVAKLGRVLGPRGLMPSPKGGTVTFDLAQAINDFKAGKLEFRNDRTGIVHVLFGKANFSEEALLGNLKAVQEAVDRNRPSGVKGKYWKSIYITSTMSPSIEVDYNLLRDLKLTEN 236          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_PORYE7.444e-4356.3050S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RL1_PROMA9.722e-4359.2950S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RK1_CYAME9.722e-4360.7450S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RK1_CYACA9.722e-4356.6250S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RL1_SYNPX1.658e-4259.4250S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNS92.166e-4259.5650S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RK1_PORPU4.825e-4256.3050S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RL1_GLOVI1.075e-4156.7450S ribosomal protein L1 OS=Gloeobacter violaceus ... [more]
RK1_THAPS1.075e-4156.3950S ribosomal protein L1, chloroplastic OS=Thalass... [more]
RK1_CYAPA1.075e-4155.5650S ribosomal protein L1, cyanelle OS=Cyanophora p... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
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