EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:12..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.834e-41
Identity = 80/140 (57.14%), Postives = 109/140 (77.86%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 435
            VG +DLIE+I  G ++FD LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ QAI+EFK GK+EYRADKTGIVH+ FGK  F  + LL N  A  +SI+ N+P GAKG YW++ ++C++MGPSI ++I  + + KL
Sbjct:   95 VGFEDLIEEIGKGVIDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADKTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPPGAKGKYWRALHVCATMGPSIEVDINALRELKL 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.395e-41
Identity = 79/138 (57.25%), Postives = 107/138 (77.54%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            LVG ++LIE I+ G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++  AI  FK GK E+RAD+ GIVH+ FGK+ F+ +DLL+N  A  ++I+ N+P GAKG YW+S Y+ +SMGPSI+++I  + D
Sbjct:   94 LVGSEELIEDIQKGMMDFEVLIATPDMMPKVARLGRQLGPRGLMPSPKGGTVTTDVATAIAAFKAGKQEFRADRAGIVHVLFGKSSFAAEDLLVNLKALQETIDRNRPSGAKGRYWRSIYVSASMGPSIQVDINALRD 231          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RK1_ODOSI (50S ribosomal protein L1, chloroplastic OS=Odontella sinensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.085e-41
Identity = 77/136 (56.62%), Postives = 104/136 (76.47%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 423
            VG DDLIE+I  G + FD LIA+PDMM K+A LG++LGP+GLMP+PK+GTV+T +   + EFKKGK EY+ADK G+VH+ FGK++F+   L+ N  A  KSIE N+P G KG Y+KS +IC++MGPSI+L++   L
Sbjct:   95 VGSDDLIEEISQGNISFDLLIATPDMMPKLAKLGRVLGPKGLMPSPKSGTVSTTLTATLSEFKKGKFEYKADKAGVVHVSFGKSNFTHSQLMENLTALYKSIEQNRPSGVKGKYFKSLFICTTMGPSIQLDLNIFL 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNJB (50S ribosomal protein L1 OS=Synechococcus sp. GN=rplA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.967e-41
Identity = 79/140 (56.43%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 435
            VG +DLIE+I  G M+FD LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ QAI+EFK GK+EYRAD+TGIVH+ FGK  F  + LL N  A  +SI+ N+P GAKG YW++ ++ ++MGPSI ++I  + + KL
Sbjct:   95 VGYEDLIEEISKGMMDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADRTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPSGAKGKYWRTLHVSATMGPSIEVDINALRELKL 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.648e-40
Identity = 79/138 (57.25%), Postives = 103/138 (74.64%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            L G ++L++ I  G M FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVT ++  AI+EFK GK+E+RADK GI+H+ FGKA F+ D LL N     ++I+ NKP GAKG +WK+ YI S+MGPSI ++I  + D
Sbjct:   93 LAGEEELVDSISKGEMGFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTADLVGAIKEFKAGKLEFRADKAGIIHVRFGKASFNADALLENLKTLQETIDRNKPSGAKGRFWKTLYITSTMGPSIEVDIAALQD 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ANASK (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain K) GN=rplA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.006e-39
Identity = 78/136 (57.35%), Postives = 104/136 (76.47%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL E+I+GGFM+FDKLIA+PDMM  V  LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F  D L  NF A ++ I   KP+ AKGVY K+  + ++MGP I++++ E+
Sbjct:   94 IVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ANAD2 (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rplA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.006e-39
Identity = 78/136 (57.35%), Postives = 104/136 (76.47%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL E+I+GGFM+FDKLIA+PDMM  V  LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F  D L  NF A ++ I   KP+ AKGVY K+  + ++MGP I++++ E+
Sbjct:   94 IVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ANADE (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.314e-39
Identity = 78/136 (57.35%), Postives = 104/136 (76.47%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL E+I+GGFM+FDKLIA+PDMM  V  LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F  + L  NF A ++ I   KP+ AKGVY K+  + ++MGP I+L++ E+
Sbjct:   94 IVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPEKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLAEL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RK1_PHATR (50S ribosomal protein L1, chloroplastic OS=Phaeodactylum tricornutum GN=rpl1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.927e-39
Identity = 74/134 (55.22%), Postives = 105/134 (78.36%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 414
            +VG D+LI QI  G + FD LIA+P+MM K+A LG++LGP+GLMP+PK+GTVT+ +   + EFKKGK EY+ADKTGIVH+ FGK++F+ + L+ N  A  +SIE N+P G KG Y+KS  IC++MGPS++L+++
Sbjct:   94 IVGNDELIAQITQGQINFDLLIATPNMMPKLAKLGRMLGPKGLMPSPKSGTVTSTLQSTLTEFKKGKFEYKADKTGIVHVNFGKSNFTNEQLVENLKALYQSIEQNRPSGVKGKYFKSVSICTTMGPSVKLDLE 227          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ANADF (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.517e-39
Identity = 74/136 (54.41%), Postives = 104/136 (76.47%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL E+++GGFM+FDK++A+PDMM  V  LGK+LGPRGLMPNPK GTV+ +I +A++E K GKVE+R +K GIVH+PFGKA F  + L  NF A ++ I   KP+ AKGVY K+  + ++MGP I+L++ E+
Sbjct:   94 IVGAEDLAEKVQGGFMDFDKVLATPDMMGVVGRLGKVLGPRGLMPNPKVGTVSADIARAVKEQKAGKVEFRVEKAGIVHVPFGKASFEPEKLKANFSAIMEIIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLSEL 229          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SYNJA1.834e-4157.1450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNP22.395e-4157.2550S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RK1_ODOSI4.085e-4156.6250S ribosomal protein L1, chloroplastic OS=Odontel... [more]
RL1_SYNJB6.967e-4156.4350S ribosomal protein L1 OS=Synechococcus sp. GN=r... [more]
RL1_PROM42.648e-4057.2550S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_ANASK1.006e-3957.3550S ribosomal protein L1 OS=Anaeromyxobacter sp. (... [more]
RL1_ANAD21.006e-3957.3550S ribosomal protein L1 OS=Anaeromyxobacter dehal... [more]
RL1_ANADE1.314e-3957.3550S ribosomal protein L1 OS=Anaeromyxobacter dehal... [more]
RK1_PHATR2.927e-3955.2250S ribosomal protein L1, chloroplastic OS=Phaeoda... [more]
RL1_ANADF8.517e-3954.4150S ribosomal protein L1 OS=Anaeromyxobacter sp. (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
back to top