EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SHESH (50S ribosomal protein L1 OS=Shewanella sediminis (strain HAW-EB3) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 66/140 (47.14%), Postives = 87/140 (62.14%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            LVG D+L  Q+K G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF    +  N  A + ++   KP  AKGV+ K   I ++MG  + ++   + D K
Sbjct:   94 LVGMDELAAQVKAGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRTDKNGIIHTTIGKVDFEAAQIKENLEALIGALVKAKPAAAKGVFLKKVSISTTMGAGVAVDQSTLDDAK 233          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_RHILO (50S ribosomal protein L1 OS=Rhizobium loti GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 62/136 (45.59%), Postives = 89/136 (65.44%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL++ ++ G ++FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVTT++  A++  K G VE+R +K GIVH   GK  F    L  N  A   ++   KP GAKG Y K   + S+MGP ++L++  +
Sbjct:   94 IVGAEDLVDIVQKGTIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVKASKGGAVEFRVEKAGIVHAGVGKVSFDVKALEENIRAFADAVTKAKPAGAKGNYVKKVSVTSTMGPGLKLDVSTL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PSEHT (50S ribosomal protein L1 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 64/132 (48.48%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            LVG +DL E +K G M FD ++ASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+ + L  N  + + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   94 LVGMEDLAELVKKGEMNFDVVVASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTAEQLQQNLESLIVALKKAKPSQAKGVYVKKVSISTTMGAGVAVD 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_NITEU (50S ribosomal protein L1 OS=Nitrosomonas europaea GN=rplA PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            +VG +DL E++K G + FD  IASPD M  V  LG+ILGPRGLMPNPK GTVT ++  AI   K G+V++RADK GIVH   G+A F  + L  N +A V ++  +KP  +KGVY +   I S+MG  +R++
Sbjct:   94 IVGFEDLAERVKAGEINFDLAIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTVDVINAIRNAKAGQVQFRADKAGIVHCTVGRASFDVEALRANIMALVDALNKSKPTTSKGVYLRKMAISSTMGVGVRVD 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_FRATW (50S ribosomal protein L1 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL +++K G M+FD +IASPD M  V  LG+ILGP+GLMPNPK GTVT ++ +A+ + K G+V YR DK GI+H   GK +F+ D L  N    +  ++  KP  +KG+Y K   + S+MGP I ++  ++
Sbjct:   94 VVGMEDLADEVKKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVDKAGIIHTTIGKVNFTSDALKQNLERLLTDLKKAKPAVSKGIYLKKVSVSSTMGPGINVDFSDL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_FRATT (50S ribosomal protein L1 OS=Francisella tularensis subsp. tularensis GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL +++K G M+FD +IASPD M  V  LG+ILGP+GLMPNPK GTVT ++ +A+ + K G+V YR DK GI+H   GK +F+ D L  N    +  ++  KP  +KG+Y K   + S+MGP I ++  ++
Sbjct:   94 VVGMEDLADEVKKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVDKAGIIHTTIGKVNFTSDALKQNLEQLLTDLKKAKPAVSKGIYLKKVSVSSTMGPGINVDFSDL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_FRATO (50S ribosomal protein L1 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL +++K G M+FD +IASPD M  V  LG+ILGP+GLMPNPK GTVT ++ +A+ + K G+V YR DK GI+H   GK +F+ D L  N    +  ++  KP  +KG+Y K   + S+MGP I ++  ++
Sbjct:   95 VVGMEDLADEVKKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVDKAGIIHTTIGKVNFTSDALKQNLEQLLTDLKKAKPAVSKGIYLKKVSVSSTMGPGINVDFSDL 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_FRATN (50S ribosomal protein L1 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL +++K G M+FD +IASPD M  V  LG+ILGP+GLMPNPK GTVT ++ +A+ + K G+V YR DK GI+H   GK +F+ D L  N    +  ++  KP  +KG+Y K   + S+MGP I ++  ++
Sbjct:   94 VVGMEDLADEVKKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVDKAGIIHTTIGKVNFTSDALKQNLEQLLTDLKKAKPAVSKGIYLKKVSVSSTMGPGINVDFSDL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_FRATM (50S ribosomal protein L1 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL +++K G M+FD +IASPD M  V  LG+ILGP+GLMPNPK GTVT ++ +A+ + K G+V YR DK GI+H   GK +F+ D L  N    +  ++  KP  +KG+Y K   + S+MGP I ++  ++
Sbjct:   94 VVGMEDLADEVKKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVDKAGIIHTTIGKVNFTSDALKQNLEQLLTDLKKAKPAVSKGIYLKKVSVSSTMGPGINVDFSDL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_FRATF (50S ribosomal protein L1 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rplA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL +++K G M+FD +IASPD M  V  LG+ILGP+GLMPNPK GTVT ++ +A+ + K G+V YR DK GI+H   GK +F+ D L  N    +  ++  KP  +KG+Y K   + S+MGP I ++  ++
Sbjct:   94 VVGMEDLADEVKKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVDKAGIIHTTIGKVNFTSDALKQNLEQLLTDLKKAKPAVSKGIYLKKVSVSSTMGPGINVDFSDL 229          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SHESH7.227e-3047.1450S ribosomal protein L1 OS=Shewanella sediminis (... [more]
RL1_RHILO7.227e-3045.5950S ribosomal protein L1 OS=Rhizobium loti GN=rplA... [more]
RL1_PSEHT7.227e-3048.4850S ribosomal protein L1 OS=Pseudoalteromonas halo... [more]
RL1_NITEU7.227e-3049.2450S ribosomal protein L1 OS=Nitrosomonas europaea ... [more]
RL1_FRATW7.227e-3044.8550S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATT7.227e-3044.8550S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATO7.227e-3044.8550S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATN7.227e-3044.8550S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATM7.227e-3044.8550S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATF7.227e-3044.8550S ribosomal protein L1 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
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