EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:12..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_CAUCR (50S ribosomal protein L1 OS=Caulobacter crescentus GN=rplA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.098e-37
Identity = 72/135 (53.33%), Postives = 99/135 (73.33%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            VG DDL E+I GGFM+FD++IA+PDMM  V  LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE+R +K GIVH   GKA F+++ L IN  A ++++  +KP GAKGV+ K   + S+MGP  +++I  +
Sbjct:   93 VGADDLYEKIAGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFRVEKAGIVHAGIGKASFTDEALAINVKALIEALNRSKPSGAKGVFIKRVGLSSTMGPGFKVDISSI 227          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_CAUCN (50S ribosomal protein L1 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.098e-37
Identity = 72/135 (53.33%), Postives = 99/135 (73.33%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            VG DDL E+I GGFM+FD++IA+PDMM  V  LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE+R +K GIVH   GKA F+++ L IN  A ++++  +KP GAKGV+ K   + S+MGP  +++I  +
Sbjct:   93 VGADDLYEKIAGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFRVEKAGIVHAGIGKASFTDEALAINVKALIEALNRSKPSGAKGVFIKRVGLSSTMGPGFKVDISSI 227          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_THESQ (50S ribosomal protein L1 OS=Thermotoga sp. (strain RQ2) GN=rplA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.674e-37
Identity = 74/137 (54.01%), Postives = 100/137 (72.99%), Query Frame = 1
Query:   16 VGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 423
            VG +DL+E+I K GF++FD  IA+PDMM  +  LGKILGPRGLMP+PK+GTVT  + +A++EFKKG++E R DKTG +HIP GK  F  + L  N +AA+K I   KP G KG + K A + S+MGP I+LN++ +L
Sbjct:   95 VGAEDLVEKIEKEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVKGQFIKKAVLSSTMGPGIKLNLQSLL 231          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PHEZH (50S ribosomal protein L1 OS=Phenylobacterium zucineum (strain HLK1) GN=rplA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.674e-37
Identity = 69/136 (50.74%), Postives = 98/136 (72.06%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL+E+I+GGFM+FD++IA+PDMM  V  LGK+LGPRGLMPNP+ GTVT N+ QA+++ K G +E+R +K GIVH   GKA F+E+ L  N  A V ++   KP GAKG Y K   + S+MGP  ++++  +
Sbjct:   92 VVGAEDLVERIQGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPRVGTVTPNVGQAVKDAKGGSIEFRVEKAGIVHAGIGKASFTEEQLTANVKAMVDALNKAKPSGAKGTYVKKVSLSSTMGPGFKIDVASL 227          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DICTD (50S ribosomal protein L1 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.972e-37
Identity = 75/140 (53.57%), Postives = 105/140 (75.00%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMM--VKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            VGG+DL++QI+ G+++FD  IA+PD+M  +K+ S LGKILGPRGLMPNPK GTVT +I +A++E+K G+VE+R D+ GIVH+P GKA FSE+ L  N +  + ++   KP  AKG Y+KS YI  SMGPS+ ++ K + D
Sbjct:   95 VGGEDLVKQIESGWLDFDVAIATPDIMGTLKIPSRLGKILGPRGLMPNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGIVHVPIGKASFSEEALYKNLMTVLGTLLRLKPAAAKGQYFKSIYISPSMGPSVPIDTKNIAD 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DICT6 (50S ribosomal protein L1 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.972e-37
Identity = 75/140 (53.57%), Postives = 105/140 (75.00%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMM--VKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            VGG+DL++QI+ G+++FD  IA+PD+M  +K+ S LGKILGPRGLMPNPK GTVT +I +A++E+K G+VE+R D+ GIVH+P GKA FSE+ L  N +  + ++   KP  AKG Y+KS YI  SMGPS+ ++ K + D
Sbjct:   95 VGGEDLVKQIESGWLDFDVAIATPDIMGTLKIPSRLGKILGPRGLMPNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGIVHVPIGKASFSEEALYKNLMTVLGTLLRLKPAAAKGQYFKSIYISPSMGPSVPIDTKNIAD 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_THENN (50S ribosomal protein L1 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.041e-36
Identity = 72/138 (52.17%), Postives = 101/138 (73.19%), Query Frame = 1
Query:   16 VGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            VG +DL+E+I K GF++FD  IA+PDMM  +  LGKILGPRGLMP+PK+GTVT  + +A++EFKKG++E R DKTG +HIP GK  F  + +  N ++A+K I   KP G KG + K A + S+MGP I+LN++ +L+
Sbjct:   95 VGAEDLVEKIEKEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMPSPKSGTVTNEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKKSFDNEKIKENVISAIKQIMQMKPAGVKGQFIKKAVLASTMGPGIKLNLQSILN 232          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_THEMA (50S ribosomal protein L1 OS=Thermotoga maritima GN=rplA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.041e-36
Identity = 73/137 (53.28%), Postives = 99/137 (72.26%), Query Frame = 1
Query:   16 VGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 423
            VG +DL+E+I K GF++FD  IA+PDMM  +  LGKILGPRGLMP+PK+GTVT  + +A++EFKKG++E R DKTG +HIP GK  F  + L  N +AA+K I   KP G KG + K   + S+MGP I+LN++ +L
Sbjct:   95 VGAEDLVEKIEKEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVKGQFIKKVVLASTMGPGIKLNLQSLL 231          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_THEP1 (50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 73/137 (53.28%), Postives = 100/137 (72.99%), Query Frame = 1
Query:   16 VGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 423
            VG +DL+E+I K GF++FD  IA+PDMM  +  LGKILGPRGLMP+PK+GTVT  + +A++EFKKG++E R DKTG +HIP GK  F  + L  N ++AV+ I   KP G KG + K A + S+MGP I+LN++ +L
Sbjct:   95 VGAEDLVEKIEKEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIISAVRQIMQMKPAGVKGQFIKKAVLSSTMGPGIKLNLQSLL 231          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_CAUSK (50S ribosomal protein L1 OS=Caulobacter sp. (strain K31) GN=rplA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.029e-36
Identity = 72/132 (54.55%), Postives = 96/132 (72.73%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 411
            VG +DL E+I GGFM+FD++IA+PDMM  V  LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE+R +K GIVH   GK  F+++ LLIN  A V ++   KP GAKG+Y K   + S+MGP  +++I
Sbjct:   93 VGAEDLYEKIVGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVGQAVKDAKGGAVEFRVEKAGIVHAGIGKVSFTDEALLINVKAMVDALVKAKPAGAKGIYVKRIGLSSTMGPGFKIDI 224          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CAUCR2.098e-3753.3350S ribosomal protein L1 OS=Caulobacter crescentus... [more]
RL1_CAUCN2.098e-3753.3350S ribosomal protein L1 OS=Caulobacter crescentus... [more]
RL1_THESQ4.674e-3754.0150S ribosomal protein L1 OS=Thermotoga sp. (strain... [more]
RL1_PHEZH4.674e-3750.7450S ribosomal protein L1 OS=Phenylobacterium zucin... [more]
RL1_DICTD7.972e-3753.5750S ribosomal protein L1 OS=Dictyoglomus turgidum ... [more]
RL1_DICT67.972e-3753.5750S ribosomal protein L1 OS=Dictyoglomus thermophi... [more]
RL1_THENN1.041e-3652.1750S ribosomal protein L1 OS=Thermotoga neapolitana... [more]
RL1_THEMA1.041e-3653.2850S ribosomal protein L1 OS=Thermotoga maritima GN... [more]
RL1_THEP11.360e-3653.2850S ribosomal protein L1 OS=Thermotoga petrophila ... [more]
RL1_CAUSK3.029e-3654.5550S ribosomal protein L1 OS=Caulobacter sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
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