EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:12..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_HELPJ (50S ribosomal protein L1 OS=Helicobacter pylori J99 GN=rplA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.374e-35
Identity = 71/140 (50.71%), Postives = 97/140 (69.29%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            +VGGDDL E+IK G ++FD +IA+PDMM  V  +G+ILGP+GLMPNPK GTVT +I +A+   K G+V +R DK G VH P GKA F E+ +  N L  VK+I   KP  AKG Y ++A +  +M PS+ L+ +E++D K
Sbjct:   95 VVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_HELPH (50S ribosomal protein L1 OS=Helicobacter pylori (strain HPAG1) GN=rplA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.374e-35
Identity = 71/140 (50.71%), Postives = 97/140 (69.29%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            +VGGDDL E+IK G ++FD +IA+PDMM  V  +G+ILGP+GLMPNPK GTVT +I +A+   K G+V +R DK G VH P GKA F E+ +  N L  VK+I   KP  AKG Y ++A +  +M PS+ L+ +E++D K
Sbjct:   95 VVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_HELP2 (50S ribosomal protein L1 OS=Helicobacter pylori (strain P12) GN=rplA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.374e-35
Identity = 71/140 (50.71%), Postives = 97/140 (69.29%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            +VGGDDL E+IK G ++FD +IA+PDMM  V  +G+ILGP+GLMPNPK GTVT +I +A+   K G+V +R DK G VH P GKA F E+ +  N L  VK+I   KP  AKG Y ++A +  +M PS+ L+ +E++D K
Sbjct:   95 VVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.374e-35
Identity = 69/140 (49.29%), Postives = 99/140 (70.71%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            +VG DDL E+IK G + FD +IA+PDMM  V  +G+ILGP+GLMPNPK GTVT ++ +A+   K G+V +R DK GI+H P GKA F+E+ +L N L  V++I   KP  AKG Y +S+ +  +M P+I+L+ +E++D K
Sbjct:   95 VVGADDLAEEIKNGNINFDMVIATPDMMALVGKVGRILGPKGLMPNPKTGTVTIDVAKAVANAKSGQVNFRVDKKGIIHAPIGKASFNEEKILDNMLELVRAINRLKPTSAKGKYIRSSSLSLTMSPAIKLDSQELMDMK 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_BACSK (50S ribosomal protein L1 OS=Bacillus clausii (strain KSM-K16) GN=rplA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.374e-35
Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 405
            VG DDLI +I  G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+EE K GKVEYR DK+G +H+P GK  F    LL NF   V+++   KP  AKG Y K+  + S+MGP IR+
Sbjct:   95 VGEDDLINKINQGWFDFDVIVATPDMMAQVGRLGRVLGPKGLMPNPKTGTVTFDVTKAVEEIKAGKVEYRVDKSGNIHVPIGKVSFDTPKLLENFQTIVETLHKVKPAAAKGTYVKNIAVASTMGPGIRV 224          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ZYMMO (50S ribosomal protein L1 OS=Zymomonas mobilis GN=rplA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.713e-35
Identity = 70/136 (51.47%), Postives = 97/136 (71.32%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL+E I+GG ++FD+ IA+PDMM  V  LGKILGP+G+MPNPK GTVT N+  A++  K G+VEYR D+TGI+H   GKA FS +D+  NF A + ++   KP GAKG Y K   I S+MGP + ++I ++
Sbjct:   94 VVGAEDLMEAIQGGSIDFDRCIATPDMMGVVGRLGKILGPKGMMPNPKLGTVTMNVADAVKAAKGGQVEYRVDRTGIIHSGIGKASFSAEDIRANFDALIDALLKAKPAGAKGRYVKKVAISSTMGPGVSIDIADL 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_LYSSC (50S ribosomal protein L1 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.713e-35
Identity = 68/131 (51.91%), Postives = 95/131 (72.52%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG  + I++I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +AIEE K GKVEYRADK GI+H P GK  FS   L+ NFLA    ++  KP  AKG Y KS  I ++MGP+++++
Sbjct:   95 VGDAEYIQKIQQGWFDFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAIEEIKAGKVEYRADKAGIIHAPIGKVSFSAAKLVENFLAVFDVVQKAKPAAAKGTYMKSVNITTTMGPAVKID 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_HELPG (50S ribosomal protein L1 OS=Helicobacter pylori (strain G27) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.713e-35
Identity = 71/140 (50.71%), Postives = 97/140 (69.29%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 432
            +VGGDDL E+IK G ++FD +IA+PDMM  V  +G+ILGP+GLMPNPK GTVT +I +A+   K G+V +R DK G VH P GKA F E+ +  N L  VK+I   KP  AKG Y ++A +  +M PS+ L+ +E++D K
Sbjct:   95 VVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_AQUAE (50S ribosomal protein L1 OS=Aquifex aeolicus GN=rplA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.461e-35
Identity = 72/137 (52.55%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   16 VGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 423
            VGGD+LI +I K  + +FD  IA+P+MM KVA LG+ILGPRGLMP+PK GTVTTN+ QAI++ K+G+VE++ DK G VH+P GK  F ++ L+ N  AA+ ++   KP GAKG Y K+  +  +M PS++L+I E+L
Sbjct:   98 VGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVL 234          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ALKMQ (50S ribosomal protein L1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.461e-35
Identity = 69/132 (52.27%), Postives = 96/132 (72.73%), Query Frame = 1
Query:   16 VGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG DDL+ +I+G  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +A++E K GKVEYR DKT I+H+P GKA F E  L  NF   ++++   KP  AKG Y+KS  + S+MGP IR+N
Sbjct:   95 VGSDDLVAKIQGENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLERAVKEIKAGKVEYRLDKTNIIHVPIGKASFEEAQLAENFKTLLEAVAKAKPAAAKGQYFKSVSVTSTMGPGIRVN 226          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_HELPJ4.374e-3550.7150S ribosomal protein L1 OS=Helicobacter pylori J9... [more]
RL1_HELPH4.374e-3550.7150S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELP24.374e-3550.7150S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELHP4.374e-3549.2950S ribosomal protein L1 OS=Helicobacter hepaticus... [more]
RL1_BACSK4.374e-3552.3150S ribosomal protein L1 OS=Bacillus clausii (stra... [more]
RL1_ZYMMO5.713e-3551.4750S ribosomal protein L1 OS=Zymomonas mobilis GN=r... [more]
RL1_LYSSC5.713e-3551.9150S ribosomal protein L1 OS=Lysinibacillus sphaeri... [more]
RL1_HELPG5.713e-3550.7150S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_AQUAE7.461e-3552.5550S ribosomal protein L1 OS=Aquifex aeolicus GN=rp... [more]
RL1_ALKMQ7.461e-3552.2750S ribosomal protein L1 OS=Alkaliphilus metallire... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
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