EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:12..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ACIBL (50S ribosomal protein L1 OS=Acidobacteria bacterium (strain Ellin345) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.461e-35
Identity = 69/132 (52.27%), Postives = 93/132 (70.45%), Query Frame = 1
Query:   16 VGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VGG+D++E+I K G+ ++D +I++PDMM  V  LGK+LGPRGLMPNPK GTVTT++  A+ E K GKVE+R DKTG+VH+P GK  F  D L+ N    + S+   KP  AKG Y K  Y+ S+MGP I ++
Sbjct:   94 VGGEDMVEKIAKEGWTDYDAVISTPDMMRSVGKLGKVLGPRGLMPNPKTGTVTTDVASAVREVKAGKVEFRTDKTGLVHVPVGKISFPPDKLVDNATTLITSVVKAKPSAAKGKYIKGCYLSSTMGPGISID 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.745e-35
Identity = 70/136 (51.47%), Postives = 97/136 (71.32%), Query Frame = 1
Query:   16 VGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            VG DDLIE+I   G+ +FD  IA+PD+M K+  LGK+LGPRGLMP+PKAGTVT ++ QA++EFK GKVE R D+TG +HIP GK  F +DDL  N ++A   +   KP+ +KG + + A I S+MGP I +++  +
Sbjct:   95 VGSDDLIEKINNEGWTDFDVAIATPDIMRKIGRLGKVLGPRGLMPSPKAGTVTDDVAQAVKEFKAGKVEVRNDRTGNIHIPIGKVSFDKDDLKENLISAFDQLTKMKPENSKGKFIRKAVIASTMGPGINIDLSSL 230          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DESHY (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain Y51) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.745e-35
Identity = 66/131 (50.38%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG +D+I +I+ G+  FD ++A+PDMM  V  LG++LGP+GLMPNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK  FSE+ L  N+   V+++   KP  AKG Y +S  + S+MGP +R+N
Sbjct:   95 VGAEDMIAKIEQGWFGFDVVVATPDMMGMVGKLGRVLGPKGLMPNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DESHD (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.745e-35
Identity = 66/131 (50.38%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG +D+I +I+ G+  FD ++A+PDMM  V  LG++LGP+GLMPNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK  FSE+ L  N+   V+++   KP  AKG Y +S  + S+MGP +R+N
Sbjct:   95 VGAEDMIAKIEQGWFGFDVVVATPDMMGMVGKLGRVLGPKGLMPNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.745e-35
Identity = 69/138 (50.00%), Postives = 99/138 (71.74%), Query Frame = 1
Query:   16 VGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 426
            VGGD+L+ +I+G  + EFD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +A+ E K GKVEYR DKT I+H+P GKA F E  L+ NF   + ++   KP  AKG Y KS  + S+MGP I++N  ++++
Sbjct:   95 VGGDELVAKIQGENWFEFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLTKAVNEIKAGKVEYRLDKTNIIHVPLGKASFEETQLVENFRTLLDAVVKAKPAAAKGQYLKSITVTSTMGPGIKINPLKVME 232          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_HELMI (50S ribosomal protein L1 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.273e-34
Identity = 67/131 (51.15%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG +DL+E+I+GG+++FD  +A+PD+M  V  LG++LGP+GLMPNPK GTVT ++ +AI+E K GK+EYR DKTGI+H P GKA F    LL N+   + ++   KP  AKG Y KS  + S+M P +R+N
Sbjct:   95 VGAEDLVEKIQGGWLDFDVAVATPDVMGLVGKLGRLLGPKGLMPNPKTGTVTFDVARAIQEIKAGKIEYRVDKTGIIHAPIGKASFDVQKLLENYQTLLDTLIKAKPAAAKGQYIKSITLSSTMSPGVRVN 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_GRABC (50S ribosomal protein L1 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.273e-34
Identity = 70/136 (51.47%), Postives = 94/136 (69.12%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            +VG +DL E ++ G +EFD+ IA+PDMM  V  LGKILGPRGLMPNPK GTVT ++  A+   K G++E+RA+K GI+H   GKA F  D L+ N  A V +I+  KP GAKG Y + A + SSMGP +RL++  +
Sbjct:   93 VVGAEDLAELVQNGTIEFDRCIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAVTAAKSGQIEFRAEKAGIIHAGIGKASFDADKLVENIRALVDAIQKAKPTGAKGTYLQKAALSSSMGPGMRLDVSSL 228          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_BREBN (50S ribosomal protein L1 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.273e-34
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 414
            VG  D+I +I+GG+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+ E K GK+EYR DK G +H P GKA F  D L+ N  A  +++   KP  AKGVY ++  + S+MGP +R+ +K
Sbjct:   95 VGDADMIAKIQGGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKIEYRVDKAGNIHAPIGKASFDADKLVENLAALTEALNRAKPAAAKGVYMRNVTLSSTMGPGVRVAVK 227          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNWW (50S ribosomal protein L1 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.662e-34
Identity = 67/131 (51.15%), Postives = 92/131 (70.23%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VGG+DL E+I+GG+ +FD  +A+PDMM  V  +GKILGPRGLMPNPKAGTVT +I + I+E K G++EYR DK+ IVH P G+  F  D L  N  A  +++   +P  AKG Y +S  +CS+M P +++N
Sbjct:   94 VGGEDLAEKIQGGWFDFDVAVATPDMMAVVGKMGKILGPRGLMPNPKAGTVTFDIERTIKELKAGRIEYRVDKSAIVHAPIGRISFEVDKLQENLNAFAEALLKARPAAAKGQYMRSVTVCSTMSPGVKIN 224          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DEIDV (50S ribosomal protein L1 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.662e-34
Identity = 69/134 (51.49%), Postives = 97/134 (72.39%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 411
            +VG D+LIE+I GGFMEFD ++A+PDMM  V   L ++LGPRGL+PNPK+GTV  ++   +   K G++E+R DKTG+VH P GKA F   +L  N+ A + ++EA KP  AKGV+ +SAY+ ++MGPSI L +
Sbjct:   94 VVGSDELIERIAGGFMEFDAVVATPDMMAAVGQKLARLLGPRGLLPNPKSGTVGPDVTGMVRGLKAGRIEFRNDKTGVVHAPIGKASFDPSNLSANYGALISALEAAKPGTAKGVFLRSAYMTTTMGPSIPLTL 227          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_ACIBL7.461e-3552.2750S ribosomal protein L1 OS=Acidobacteria bacteriu... [more]
RL1_PETMO9.745e-3551.4750S ribosomal protein L1 OS=Petrotoga mobilis (str... [more]
RL1_DESHY9.745e-3550.3850S ribosomal protein L1 OS=Desulfitobacterium haf... [more]
RL1_DESHD9.745e-3550.3850S ribosomal protein L1 OS=Desulfitobacterium haf... [more]
RL1_ALKOO9.745e-3550.0050S ribosomal protein L1 OS=Alkaliphilus oremlandi... [more]
RL1_HELMI1.273e-3451.1550S ribosomal protein L1 OS=Heliobacterium modesti... [more]
RL1_GRABC1.273e-3451.4750S ribosomal protein L1 OS=Granulibacter bethesde... [more]
RL1_BREBN1.273e-3448.8750S ribosomal protein L1 OS=Brevibacillus brevis (... [more]
RL1_SYNWW1.662e-3451.1550S ribosomal protein L1 OS=Syntrophomonas wolfei ... [more]
RL1_DEIDV1.662e-3451.4950S ribosomal protein L1 OS=Deinococcus deserti (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
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