EY650051

Overview
NameEY650051
Unique NameEY650051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:12..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PELPD (50S ribosomal protein L1 OS=Pelobacter propionicus (strain DSM 2379) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            VG +DL+ +I+ G+ EFD  IA+PDMM  V  +GK+LGPRGLMPNPK GTVT  + +A++E K GKVE+R +K GIVH P GK  F  D L  N LA V+++   KP  AKG+Y K   + S+MGP I L+I ++
Sbjct:   95 VGAEDLVSKIQEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFEVSRAVKESKAGKVEFRVEKAGIVHAPVGKVSFDADSLKGNLLALVEALVKAKPSAAKGIYIKKISMSSTMGPGINLDIADV 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_GEOSF (50S ribosomal protein L1 OS=Geobacter sp. (strain FRC-32) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 67/135 (49.63%), Postives = 92/135 (68.15%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            VG DDL+ +I+ G+ EFD  IA+PDMM  V  +GK+LGPRGLMPNPK GTVT ++ +A+ E K GKVE+R +K GI+H P GK  F  D L  N LA + ++  +KP  AKG Y K   + S+MGP + L++ ++
Sbjct:   94 VGADDLVAKIQEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVNESKSGKVEFRVEKAGIIHAPVGKVSFETDKLKENILALIDALVKSKPSAAKGTYIKKISVSSTMGPGVNLDVSDV 228          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DEHSC (50S ribosomal protein L1 OS=Dehalococcoides sp. (strain CBDB1) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 71/134 (52.99%), Postives = 99/134 (73.88%), Query Frame = 1
Query:   19 GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTT--NIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 414
            GGD+LI++I+ GF++FD  I++PDMM KV  LGK+LG RGLMPNPK+GTV    +  + IEE +KG+VE++ D++GIVHI  GKA F    LL N  + V +I  +KP GAKG Y KSAY+ ++MGP +RL+++
Sbjct:   96 GGDELIKKIEAGFLDFDVAISTPDMMSKVGKLGKVLGRRGLMPNPKSGTVVPAEDFKKVIEEARKGRVEFKLDRSGIVHIILGKASFEGQMLLENMTSVVDAIIRSKPTGAKGQYIKSAYLATTMGPGVRLDLR 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DEHSB (50S ribosomal protein L1 OS=Dehalococcoides sp. (strain BAV1) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 71/134 (52.99%), Postives = 99/134 (73.88%), Query Frame = 1
Query:   19 GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTT--NIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 414
            GGD+LI++I+ GF++FD  I++PDMM KV  LGK+LG RGLMPNPK+GTV    +  + IEE +KG+VE++ D++GIVHI  GKA F    LL N  + V +I  +KP GAKG Y KSAY+ ++MGP +RL+++
Sbjct:   96 GGDELIKKIEAGFLDFDVAISTPDMMSKVGKLGKVLGRRGLMPNPKSGTVVPAEDFKKVIEEARKGRVEFKLDRSGIVHIILGKASFEGQMLLENMTSVVDAIIRSKPTGAKGQYIKSAYLATTMGPGVRLDLR 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_PARL1 (50S ribosomal protein L1 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.835e-34
Identity = 67/131 (51.15%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 405
            +VG DDL E ++ G ++FD+ IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++ +A++  K G VE+R +K GI+H   GKA FSED +L+N  A + +++  KP GAKG Y K   I S+MGP +++
Sbjct:   94 IVGDDDLAEIVQSGKIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTPDVAEAVKAAKGGAVEFRVEKAGIIHAGVGKASFSEDQILVNIRALIDAVQKAKPTGAKGTYIKRIAISSTMGPGVKV 224          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DEHE1 (50S ribosomal protein L1 OS=Dehalococcoides ethenogenes (strain 195) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.835e-34
Identity = 69/134 (51.49%), Postives = 99/134 (73.88%), Query Frame = 1
Query:   19 GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTT--NIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 414
            GGD+LI++++ GF++FD  I++PDMM KV  LGK+LG RGLMPNPK+GTV    +  Q IEE +KG+VE++ D++GIVHI  GKA F    LL N  + V +I  +KP GAKG Y KSAY+ ++MGP ++++++
Sbjct:   96 GGDELIKKVEAGFLDFDVAISTPDMMSKVGKLGKVLGRRGLMPNPKSGTVVPAEDFKQVIEEARKGRVEFKLDRSGIVHIILGKASFEGQALLENMTSVVDAIIRSKPTGAKGQYIKSAYLATTMGPGVKMDLR 229          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_HYPNA (50S ribosomal protein L1 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.703e-34
Identity = 66/135 (48.89%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   13 LVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 417
            +VG DDL E++ GGFM+FD++IA+PDMM  V  LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE++ +K GIVH   GKA FS+ D+  N  A + ++   +P GAKG + +   + S+MG  + +++ E
Sbjct:   94 IVGADDLFEKVNGGFMDFDRVIATPDMMGLVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFKVEKAGIVHAGVGKASFSDADIEKNVQAFISAVVKARPSGAKGTFVRKVTLSSTMGTGVAIDLAE 228          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_GEOUR (50S ribosomal protein L1 OS=Geobacter uraniireducens (strain Rf4) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.703e-34
Identity = 67/135 (49.63%), Postives = 92/135 (68.15%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 420
            VG DDL+ +I+ G+ +FD  IA+PDMM  V  +GK+LGPRGLMPNPK GTVT ++ +A+ E K GKVE+R +K GI+H P GK  F  D L  N LA V ++  +KP  AKG Y K   + S+MGP + L++ ++
Sbjct:   94 VGADDLVAKIQEGWFDFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVNESKSGKVEFRVEKAGIIHAPVGKVSFDADKLKENILALVDALVKSKPSAAKGTYIKKISVSSTMGPGVNLDVSDV 228          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_DESAA (50S ribosomal protein L1 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.703e-34
Identity = 63/131 (48.09%), Postives = 95/131 (72.52%), Query Frame = 1
Query:   16 VGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            VG DDL+E+I+GG+++FDK IA+PDMM  V  +G+ILGPRGLMPN K GTVT ++ +A++E K GK+++R ++ GI+H P GK  F  + LL N  A  ++++  KP  AKG Y KS  + ++MGP ++++
Sbjct:   95 VGNDDLVEKIQGGWLDFDKAIATPDMMGTVGKMGRILGPRGLMPNAKTGTVTFDVAKAVQELKAGKIDFRVERAGILHAPMGKVSFGAEKLLDNISAFFETVQRLKPSAAKGTYMKSIAVSTTMGPGVKID 225          
BLAST of EY650051 vs. ExPASy Swiss-Prot
Match: RL1_SYNAS (50S ribosomal protein L1 OS=Syntrophus aciditrophicus (strain SB) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.836e-34
Identity = 69/130 (53.08%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   19 GGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 408
            G D+ IE+IK G++EFD++IA+PDMM  V  LGKILGPRGLMPNPK GTVT ++  A++E K GKVE+R +K GIVH P GK  F  D L+ N  A ++ I   KP  +KG Y K   + S+MGP +R++
Sbjct:   96 GSDEFIEKIKSGWLEFDRVIATPDMMGNVGKLGKILGPRGLMPNPKVGTVTFDVATAVKEVKAGKVEFRVEKAGIVHSPVGKVSFGPDRLMENIQALIEMIIKLKPATSKGTYIKGIALSSTMGPGVRVD 225          
The following BLAST results are available for this feature:
BLAST of EY650051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PELPD2.171e-3451.8550S ribosomal protein L1 OS=Pelobacter propionicus... [more]
RL1_GEOSF2.171e-3449.6350S ribosomal protein L1 OS=Geobacter sp. (strain ... [more]
RL1_DEHSC2.171e-3452.9950S ribosomal protein L1 OS=Dehalococcoides sp. (s... [more]
RL1_DEHSB2.171e-3452.9950S ribosomal protein L1 OS=Dehalococcoides sp. (s... [more]
RL1_PARL12.835e-3451.1550S ribosomal protein L1 OS=Parvibaculum lavamenti... [more]
RL1_DEHE12.835e-3451.4950S ribosomal protein L1 OS=Dehalococcoides etheno... [more]
RL1_HYPNA3.703e-3448.8950S ribosomal protein L1 OS=Hyphomonas neptunium (... [more]
RL1_GEOUR3.703e-3449.6350S ribosomal protein L1 OS=Geobacter uraniireduce... [more]
RL1_DESAA3.703e-3448.0950S ribosomal protein L1 OS=Desulfatibacillum alke... [more]
RL1_SYNAS4.836e-3453.0850S ribosomal protein L1 OS=Syntrophus aciditrophi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-F06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650051 ID=EY650051; Name=EY650051; organism=Citrus sinensis; type=EST; length=762bp
CGGACGCGTGGGTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAAGG
AGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGTTA
AGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAAAT
CCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAATT
CAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCACA
TACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACTTC
CTTGCTGCTGTTAAATCAATTGAAGCAAACAAGCCAAAAGGGGCCAAAGG
AGTGTACTGGAAAAGTGCTTACATTTGCTCATCAATGGGACCTTCCATTC
GATTAAACATAAAAGAAATGCTCGATTACAAGCTTCCATCAAATTTCTAA
ACGACATAACTAAATTTTGTAAATGATATCTTTAACTGTTCAGTCAGCCT
CTTTGATACCCATGCCAGGGCTTGCCACTGCTTGGCAAAAGTTGTAGGAG
AGCGAATTATGGTGAGGTGAGGGAGATCTTGATTATCAATGTGGATGAGA
TTGTAGCAAATAAAAAAAAAGGAAAAATGCATACAGCATGGCTTTTTTCC
GTACTGAAAAAGATATTATTATTAACGCCCACTCTCAGCTTCATTACCGC
AATTTTTTTGTTCTGTAAAATTATTTGGTATCCTACTGAATATTTTTCCA
AAAAAAAAAAAA
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