EY650045

Overview
NameEY650045
Unique NameEY650045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: PORA_WHEAT (Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.393e-75
Identity = 158/279 (56.63%), Postives = 194/279 (69.53%), Query Frame = 3
Query:   66 VPSAFSVPKEGKT--SASFKDSSLF-GVSFSEHAKADFSSSALRCEREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPXKPNLGT*XDLLGA*MG*QLXHDDXGD--FDGARP-TXQQICTCL 884
            +PS  SVPK+G +  +A+ KD++ F GVS    +KA  +S A+R +        V  A +  T SP    + P GKKTLR+G V+ITGASSGLGLA AKALAETGKWH++MACRDFLKA +AAK+AGMA  +YT+MHLDLASLDSVRQFVD FRR+  PLDVLVCNAA+Y PTA+ PTFTA+G E+SVG NHLGHF          ++SDYPS+R++IVGSITGN+NTLAGNVP K +LG    L G   G        GD  FDGA+     ++C  L
Sbjct:    6 LPSTLSVPKKGSSMGAAAVKDTAAFLGVS----SKAKKASLAVRTQ--------VATAPSSVTTSPGSATAKPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRPTARTPTFTADGHEMSVGVNHLGHFLLARLLMEDLQKSDYPSRRMVIVGSITGNSNTLAGNVPPKASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNML 272          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: POR_MARPA (Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.866e-65
Identity = 138/250 (55.20%), Postives = 168/250 (67.20%), Query Frame = 3
Query:  117 KDSSLFGVSFSEHAKADFSSSALRCER---EFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPXKPNLGT*XDLLGA*MG*QLXH-DDXGDFDGAR 854
            K+S+  G+   E AK  F  + L           + GV+     A  +PA  ++ P  KKT  K + IITGASSGLGLATAKALA+TG+WH+IMACRDFLKAERAA+S G+ K++YT++H DLAS DSVR FVD FRR+ R LDVLVCNAAVY PT KEP F+AEGFELSVGTNH+GHF          +++    KR+IIVGSITGN+NT+AGNVP K NLG    L G   G       D G+FDGA+
Sbjct:   86 KESAFLGLRMGEVAK--FGGALLSVSTVAANLKSKPGVLSVN--AVTAPAETMNKPSSKKTATKSTCIITGASSGLGLATAKALADTGEWHVIMACRDFLKAERAARSVGIPKDSYTVIHCDLASFDSVRAFVDNFRRTERQLDVLVCNAAVYFPTDKEPKFSAEGFELSVGTNHMGHFLLARLLMEDLQKAKDSLKRMIIVGSITGNSNTVAGNVPPKANLGHLRGLAGGLNGVNSSSMIDGGEFDGAK 331          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: POR_AVESA (Protochlorophyllide reductase (Fragment) OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 7.092e-65
Identity = 129/196 (65.82%), Postives = 148/196 (75.51%), Query Frame = 3
Query:  306 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPXKPNLGT*XDLLGA*MG*QLXHDDXGD--FDGARP-TXQQICTCL 884
            V+ITGASSGLGLA AKALAETGKWH++MACRDFLKA +AAK+AGMA  +YT+MHLDLASLDSVRQFVD FRR+  PLDVLVCNAA+Y PTA++PTFTAEG E+SVG NHLGHF          ++SDYPS+RL+IVGSITGN NTLAGNVP K NLG    L G   G        GD  FDGA+     ++C  L
Sbjct:    2 VVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRPTARKPTFTAEGVEMSVGVNHLGHFLLARLLLEDLQKSDYPSRRLVIVGSITGNDNTLAGNVPPKANLGDLRGLAGGLTGASGSAMIDGDESFDGAKAYKDSKVCNML 197          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: POR_CHLRE (Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.172e-59
Identity = 139/278 (50.00%), Postives = 169/278 (60.79%), Query Frame = 3
Query:   72 SAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCEREFSQRNGVVRAQTMATASPAV-DVSSPQG----KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPXKPNLGT*XDLLGA*MG*QLXHD--DXGDFDGARPTXQQICTCL 884
            SA SV    + S+  + +    VS    ++    + AL      ++   VV A T    SP++ D   P        T +K + IITGASSGLGL  AKALA TG+WH++MACRDFLKAE+AAK  GM   +Y+I+HLDL+SL+SVRQFV  F+ SGR LD LVCNAAVYLPTAKEP FTA+GFELSVGTNHLGHF          K +     R IIVGSITGNTNTLAGNVP K NLG   DL G   G    +   D  +F+GA+        C+
Sbjct:    6 SAKSVSARAQVSSKAQAAPAVAVSGRTSSRV-MPAPALAARSSVARTPLVVCAATATAPSPSLADKFKPNAIARVPATQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFLKAEQAAKKVGMPAGSYSILHLDLSSLESVRQFVQNFKASGRRLDALVCNAAVYLPTAKEPRFTADGFELSVGTNHLGHFLLTNLLLDDLKNAPNKQPRCIIVGSITGNTNTLAGNVPPKANLG---DLSGLAAGVPAANPMMDGQEFNGAKAYKDSKVACM 279          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: POR_PLEBO (Light-dependent protochlorophyllide reductase OS=Plectonema boryanum GN=por PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.630e-43
Identity = 85/155 (54.84%), Postives = 111/155 (71.61%), Query Frame = 3
Query:  294 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVP 758
            +K +V+ITGASSG+GL  AKAL + G WH++MACR+  KA+ AAKS GM+ ++YT+MH+DL SLDSVR+FV  FR SG+ LD LVCNAAV++P  KEP  + EG+ELSV TNH GHF          K S +   RLII+G++T N+  L G +P
Sbjct:    5 QKPTVVITGASSGVGLYAAKALVKRG-WHVVMACRNLEKADSAAKSLGMSPDSYTLMHIDLGSLDSVRKFVTQFRESGKSLDALVCNAAVHMPLLKEPMRSPEGYELSVATNHFGHFLLCNLLLEDLKHSTHNDPRLIILGTVTANSKELGGKIP 158          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803) GN=por PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.489e-38
Identity = 85/162 (52.47%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  297 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGN--VPXKPNLG 776
            K +VIITGASSG+GL  AKAL + G WH+IMACR+  K ++ A   G  K++YTI+ LDL  LDSVR+FV  FR  GRPL  LVCNAAVY P   EP ++A+ +ELSV TNHLGHF          K      KRLII+G++T N+  L G   +P  P+LG
Sbjct:    6 KPTVIITGASSGVGLYGAKALIDKG-WHVIMACRNLDKTQKVADELGFPKDSYTIIKLDLGYLDSVRRFVAQFRELGRPLKALVCNAAVYFPLLDEPLWSADDYELSVATNHLGHFLLCNLLLEDLKACPDADKRLIILGTVTANSKELGGKIPIPAPPDLG 166          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = 3
Query:  306 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 644
            +I+TGA+SG+G  TA++ A  G  H+I+ACR+  +A +AA       +K    ++ LDLASL SVRQF + F+ +  PL VLVCNAAV    ++    T +GFE +    HLGHF
Sbjct:  124 IIVTGANSGIGFETARSFALHGA-HVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAV---CSQPWRLTEDGFESTFQICHLGHF 234          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.038e-15
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  282 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE-GFELSVGTNHLGHF 644
            K T+   +VI+TGA++G+G  TA  LA  G  +II+ACRD  K E AAK       N+ +   HLDLASL S+R+F          +D+L+ NA V     + P +T E GFE+  G NHLGHF
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELARRGG-NIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGV----MRCPHWTTEDGFEMQFGVNHLGHF 151          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  306 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 644
            V++TGA+SG+G  TAK+ A  G  H+I+ACR+  +A  A         K     M LDLA L SV+ F + F+    PL VLVCNAA +   A   + T +G E +   NHLGHF
Sbjct:  127 VVVTGANSGIGFETAKSFALHGA-HVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATF---ALPWSLTKDGLETTFQVNHLGHF 237          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.154e-15
Identity = 58/167 (34.73%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  264 VSSPQGKKTLRKGS-----------VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSI 722
            +++PQ +K L  G            V++TGA++G+G  TAK LA+ G   + +ACRD  K E  AK       N  ++   LDL+   S+R F   F    + L VL+ NA V + P +K    TA+GFE+ +G NHLGHF          K+S     R++ V S+
Sbjct:   19 MAAPQIRKMLSSGVCTSTVQLPGKVVVVTGANTGIGKETAKELAQRGA-RVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSK----TADGFEMHIGVNHLGHFLLTHLLLEKLKES--APSRIVNVSSL 178          
The following BLAST results are available for this feature:
BLAST of EY650045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PORA_WHEAT3.393e-7556.63Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_MARPA1.866e-6555.20Protochlorophyllide reductase, chloroplastic OS=Ma... [more]
POR_AVESA7.092e-6565.82Protochlorophyllide reductase (Fragment) OS=Avena ... [more]
POR_CHLRE1.172e-5950.00Protochlorophyllide reductase, chloroplastic OS=Ch... [more]
POR_PLEBO7.630e-4354.84Light-dependent protochlorophyllide reductase OS=P... [more]
POR_SYNY31.489e-3852.47Light-dependent protochlorophyllide reductase OS=S... [more]
WWOX_DANRE2.092e-1644.35WW domain-containing oxidoreductase OS=Danio rerio... [more]
RDH13_HUMAN1.038e-1543.55Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
WWOX_HUMAN3.946e-1542.61WW domain-containing oxidoreductase OS=Homo sapien... [more]
RDH11_HUMAN5.154e-1534.73Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-E12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650045 ID=EY650045; Name=EY650045; organism=Citrus sinensis; type=EST; length=918bp
AAAAATCCTTTANAAAGAAAGTCTCAACACTAAGCTAGTTAATGGCCCTC
CAAGCTGCTGCTTTGGTTCCCTCTGCTTTCTCAGTCCCCAAAGAGGGCAA
AACTAGTGCATCTTTCAAGGACTCAAGTCTTTTTGGAGTTTCATTCTCAG
AACATGCAAAGGCTGATTTCAGCTCTTCTGCATTAAGATGCGAGAGAGAA
TTCAGCCAAAGAAATGGGGTGGTAAGAGCCCAAACGATGGCTACTGCCTC
TCCAGCAGTCGATGTTTCTTCCCCACAAGGGAAGAAAACTCTCAGAAAAG
GCAGCGTTATAATCACCGGCGCATCGTCTGGATTGGGGCTGGCCACAGCT
AAGGCTTTAGCTGAAACTGGGAAATGGCATATAATCATGGCCTGCAGGGA
TTTTCTCAAGGCTGAAAGAGCCGCCAAGTCGGCTGGCATGGCTAAGGAGA
ACTACACTATCATGCATTTAGATCTGGCTTCCCTTGACAGTGTTCGCCAA
TTTGTTGATACCTTCAGGCGATCAGGCAGACCTCTCGATGTGCTAGTTTG
CAATGCTGCTGTTTATTTGCCAACTGCTAAGGAGCCTACATTTACGGCTG
AGGGATTTGAACTTAGTGTTGGAACCAACCATCTTGGTCACTTCCTCCTT
TCACGGCTGTTGCTTGATGACTTGAAGCAATCTGATTACCCATCAAAGCG
TCTCATCATCGTTGGCTCAATCACAGGAAACACAAATACCTTGGCTGGTA
ATGTACCTNCTAAGCCCAACCTGGGGACTTAANGGGATTTGCTGGGAGCT
TAAATGGGCTAACAGCTATNCCATGATGACNGTGGAGATTTTGACGGTGC
CAGGCCTACANGACAGCAAATCTGCACATGCTTACATGCAGAGTTCACAG
GCGGTTCACCGAGAACTG
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