EY650045

Overview
NameEY650045
Unique NameEY650045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.791e-15
Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  306 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGS 719
            +IITGA+SG+G  TAK+ A  G + +I+ACR+  +   A +       K     M LDLASL SV+ F + F+    PL +LVCNAA++         T +G E +   NHLGHF          ++S     R+++V S
Sbjct:  127 IIITGANSGIGFETAKSFALHGAY-VILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIF---GSSWCLTEDGLESTFQVNHLGHFYLVQLLEDILRRSS--PARVVVVSS 260          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  306 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 644
            V++TGA+SG+G  TAK+ A  G  H+I+ACR+  +A  A         K     + LDLA L SV+ F + F+    PL VLVCNAA +   A   + T +G E +   NHLGHF
Sbjct:  127 VVVTGANSGIGFETAKSFALHGA-HVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATF---ALPWSLTKDGLETTFQVNHLGHF 237          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 62/152 (40.79%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  303 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-------AGMAKENYT-----IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGS 719
            +V+ITGA+SGLG ATA  L   G   +IM CRD  +AE AA         AG A  + T     +  LDLASL SVR F     +    LDVL+ NA V+  P  K    T +GFE+  G NHLGHF          K S     R+++V S
Sbjct:   46 TVLITGANSGLGRATAAELLRLGA-RVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTK----TEDGFEMQFGVNHLGHFLLTNLLLGLLKSS--APSRIVVVSS 190          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  306 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHF 644
            V+ITGA++G+G  TA+ LA  G   + +ACRD LK E AA    +  +N  ++   LDL+   S+R F + F    + L +L+ NA V + P +K    TA+GFE  +G NHLGHF
Sbjct:   42 VVITGANTGIGKETARELASRGA-RVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSK----TADGFETHLGVNHLGHF 152          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.363e-14
Identity = 53/124 (42.74%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  282 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE-GFELSVGTNHLGHF 644
            K T+   +VI+TGA++G+G  TA  LA+ G  ++I+ACRD  K E AAK       N  +    LDLASL S+R+F     +    +D+LV NAAV     + P +T E GFE+  G N+LGHF
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELAKRGG-NVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAV----MRCPHWTTEDGFEMQFGVNYLGHF 151          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.363e-14
Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  306 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 683
            V+ITGA++G+G  TA+ LA  G   + +ACRD LK E AA       +N  ++   LDL+   S+R F + F    + L +L+ NA V L P +K    TA+GFE  +  NHLGHF          K+S
Sbjct:   42 VVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSK----TADGFETHLAVNHLGHFLLTHLLLGRLKES 165          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.698e-14
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  306 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 683
            V+ITGA++G+G  TA+ LA  G   + +ACRD LK E AA       +N  ++   LDL+   S+R F + F    + L +L+ NA V + P +K    T +GFE   G NHLGHF          K+S
Sbjct:   42 VVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSK----TTDGFETHFGVNHLGHFLLTYLLLERLKES 165          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  309 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 683
            I+TGA++G+G  TAK LA+ G   + +ACRD  K E AA+       N  +    LDLA   S+R F   F    + L +L+ NA V + P +K    TA+GFE+ +G NHLGHF          K+S
Sbjct:   42 IVTGANTGIGKETAKDLAQRGA-RVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSK----TADGFEMHIGVNHLGHFLLTHLLLEKLKES 164          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 59/155 (38.06%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  303 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA--------KSAGMAKE-------NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGS 719
            +V+ITGA+SGLG ATA  L   G   +IM CRD  +AE AA        ++A    E          +  LDLASL SVR F     +    LDVL+ NA ++  P  K    T +GFE+  G NHLGHF          K S     R+++V S
Sbjct:   45 TVLITGANSGLGRATAAELLRLGA-RVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMK----TEDGFEMQFGVNHLGHFLLTNLLLGLLKSS--APSRIVVVSS 192          
BLAST of EY650045 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 3
Query:  309 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYP--SKRLIIVGSIT 725
            I+TG + G+G +TAK LA  G  H+I+A  +  KA++          N  +  ++ DLAS+ S+RQFV  F+    PL VL+ NA V +   ++   T +GFE   G N+LGHF          K+S  P  S R++ V S T
Sbjct:   47 IVTGGTDGIGYSTAKHLARLGM-HVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRK---TRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSAT 185          
The following BLAST results are available for this feature:
BLAST of EY650045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
WWOX_CHICK8.791e-1536.43WW domain-containing oxidoreductase OS=Gallus gall... [more]
WWOX_PONAB1.148e-1441.74WW domain-containing oxidoreductase OS=Pongo abeli... [more]
RDH14_MOUSE1.148e-1440.79Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 ... [more]
RDH12_HUMAN1.148e-1441.38Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 ... [more]
RDH13_MOUSE4.363e-1442.74Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ... [more]
RDH12_BOVIN4.363e-1438.76Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE... [more]
RDH12_MOUSE5.698e-1437.98Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
RDH11_MOUSE7.442e-1439.06Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 ... [more]
RDH14_HUMAN1.269e-1338.06Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 ... [more]
DHRSX_HUMAN1.269e-1336.36Dehydrogenase/reductase SDR family member on chrom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-E12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650045 ID=EY650045; Name=EY650045; organism=Citrus sinensis; type=EST; length=918bp
AAAAATCCTTTANAAAGAAAGTCTCAACACTAAGCTAGTTAATGGCCCTC
CAAGCTGCTGCTTTGGTTCCCTCTGCTTTCTCAGTCCCCAAAGAGGGCAA
AACTAGTGCATCTTTCAAGGACTCAAGTCTTTTTGGAGTTTCATTCTCAG
AACATGCAAAGGCTGATTTCAGCTCTTCTGCATTAAGATGCGAGAGAGAA
TTCAGCCAAAGAAATGGGGTGGTAAGAGCCCAAACGATGGCTACTGCCTC
TCCAGCAGTCGATGTTTCTTCCCCACAAGGGAAGAAAACTCTCAGAAAAG
GCAGCGTTATAATCACCGGCGCATCGTCTGGATTGGGGCTGGCCACAGCT
AAGGCTTTAGCTGAAACTGGGAAATGGCATATAATCATGGCCTGCAGGGA
TTTTCTCAAGGCTGAAAGAGCCGCCAAGTCGGCTGGCATGGCTAAGGAGA
ACTACACTATCATGCATTTAGATCTGGCTTCCCTTGACAGTGTTCGCCAA
TTTGTTGATACCTTCAGGCGATCAGGCAGACCTCTCGATGTGCTAGTTTG
CAATGCTGCTGTTTATTTGCCAACTGCTAAGGAGCCTACATTTACGGCTG
AGGGATTTGAACTTAGTGTTGGAACCAACCATCTTGGTCACTTCCTCCTT
TCACGGCTGTTGCTTGATGACTTGAAGCAATCTGATTACCCATCAAAGCG
TCTCATCATCGTTGGCTCAATCACAGGAAACACAAATACCTTGGCTGGTA
ATGTACCTNCTAAGCCCAACCTGGGGACTTAANGGGATTTGCTGGGAGCT
TAAATGGGCTAACAGCTATNCCATGATGACNGTGGAGATTTTGACGGTGC
CAGGCCTACANGACAGCAAATCTGCACATGCTTACATGCAGAGTTCACAG
GCGGTTCACCGAGAACTG
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