EY650041

Overview
NameEY650041
Unique NameEY650041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_ODOSI (Photosystem I reaction center subunit III OS=Odontella sinensis GN=psaF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.391e-35
Identity = 75/156 (48.08%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  246 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKLV 713
            P  A+ADI GLT C ES  F KR              Y   S PALA++  +E+T+ RFD Y +  LLCG+ GLPHLI  G   H  EFI PG  F+YI+GWIGWVGR YL A+S  K P   EIII+VPLA  ++  G+ WP++A  E +   LV
Sbjct:   19 PNRALADIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALALQQQIERTQARFDKYSRSELLCGTDGLPHLIADGRWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFISNDLV 174          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_CYACA (Photosystem I reaction center subunit III OS=Cyanidium caldarium GN=psaF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.723e-31
Identity = 68/141 (48.23%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  270 SGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXE 692
            S LTPC+ S QF  R              Y  +S    +IK  +EKTK RFD Y K  LLCG  GLPHLI  GD +H GEF  P +LF+YIAGWIGW G+ YL       KP   EIIID+P A   +F GF+WP+ A  E
Sbjct:   29 STLTPCENSAQFQARLNNNIKKLENKLTYYKQNSQEYTSIKQQIEKTKIRFDKYAKSSLLCGEDGLPHLITDGDWQHSGEFFIPSVLFIYIAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILALKE 169          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_SYNP6 (Photosystem I reaction center subunit III OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaF PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.795e-30
Identity = 75/153 (49.02%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  255 AVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKLV 713
            A AD++GLTPC ES +F +R                       A  A   + K RF+NY +   LCG+ GLPHLIV G   H G+FI P LLFLYIAGWIGWVGRSYL AI  +K  A KEI+IDVPLA      GF+WP+AA  E    KL+
Sbjct:   21 ASADVAGLTPCSESPRFIQR-----------------------AEAAATPQAKARFENYSQ--ALCGADGLPHLIVDGRLDHAGDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLL 148          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_THEEB (Photosystem I reaction center subunit III OS=Thermosynechococcus elongatus (strain BP-1) GN=psaF PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.422e-27
Identity = 66/146 (45.21%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  255 AVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXE 692
            A AD++GL PCK+S  F KR                  +A A+   A     ++RF+ Y +   LCG  GLPHL+V G     G+F+ P +LFLYIAGWIGWVGR+YLIA+    +   KEIIIDVPLA   +  GF+WP+AA  E
Sbjct:   21 ASADVAGLVPCKDSPAFQKR------------------AAAAVNTTADPASGQKRFERYSQ--ALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKE 146          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_SYNEN (Photosystem I reaction center subunit III OS=Synechococcus elongatus naegeli GN=psaF PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.422e-27
Identity = 66/146 (45.21%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  255 AVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXE 692
            A AD++GL PCK+S  F KR                  +A A+   A     ++RF+ Y +   LCG  GLPHL+V G     G+F+ P +LFLYIAGWIGWVGR+YLIA+    +   KEIIIDVPLA   +  GF+WP+AA  E
Sbjct:   21 ASADVAGLVPCKDSPAFQKR------------------AAAAVNTTADPASGQKRFERYSQ--ALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKE 146          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_SYNY3 (Photosystem I reaction center subunit III OS=Synechocystis sp. (strain PCC 6803) GN=psaF PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.278e-24
Identity = 65/156 (41.67%), Postives = 78/156 (50.00%), Query Frame = 3
Query:  246 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKLV 713
            P  +  D + LTPC E+                    Y   S   L         K R + Y     LCG  G PHLIV G   H G+F+ P +LFLYIAGWIGWVGRSYLI I   K P M+E++I+VPLA   +  GF WP+AA  E    KLV
Sbjct:   19 PSASADDFANLTPCSENPA------------------YLAKSKNFLNTTNDPNSGKIRAERYAS--ALCGPEGYPHLIVDGRFTHAGDFLIPSILFLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLV 154          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_MASLA (Photosystem I reaction center subunit III OS=Mastigocladus laminosus GN=psaF PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.055e-22
Identity = 64/154 (41.56%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  252 PAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGE-KKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKL 710
            PA A  + L PC ES  F +R                  +  A    A  E  K+RF+ Y +   LCG  GLPHLIV G   H G+F+ P +LFLYIAGWIGWVGR+YL  I  +      KEI I++P+A  ++  GF+WP AA  E L  +L
Sbjct:   20 PAQALGADLVPCSESPAFQQR------------------AQVARNTTADPESGKKRFERYSQ--ALCGPEGLPHLIVDGRLDHAGDFLIPSILFLYIAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLSGEL 153          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_ANAVT (Photosystem I reaction center subunit III OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaF PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21
Identity = 60/153 (39.22%), Postives = 79/153 (51.63%), Query Frame = 3
Query:  252 PAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKL 710
            PA A  + LTPC E+  F                     +  A    A  +  ++RF+ Y +   LCG  G PHLIV G     G+F+ P +LFLYIAGWIGWVGR+YL AI  +     KEI +D+ LA  ++  GF+WP AA  E L  +L
Sbjct:   20 PAKALGADLTPCAENPAFQAL------------------AKNARNTTADPQSGQKRFERYSQ--ALCGPEGYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSGEL 152          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_ANASP (Photosystem I reaction center subunit III OS=Anabaena sp. (strain PCC 7120) GN=psaF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.684e-20
Identity = 59/153 (38.56%), Postives = 79/153 (51.63%), Query Frame = 3
Query:  252 PAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKL 710
            PA A  + LTPC E+  F                     +  A    A  +  ++RF+ Y +   LCG  G PHLIV G     G+F+ P +LFLYIAGWIGWVGR+YL AI  +     KEI +D+ +A  ++  GF+WP AA  E L  +L
Sbjct:   20 PAKALGADLTPCAENPAFQAL------------------AKNARNTTADPQSGQKRFERYSQ--ALCGPEGYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGEL 152          
BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_PROMA (Photosystem I reaction center subunit III OS=Prochlorococcus marinus GN=psaF PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.972e-17
Identity = 54/150 (36.00%), Postives = 72/150 (48.00%), Query Frame = 3
Query:  270 SGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSXGLPHLIVSG---------DQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXE 692
            S LT C E+ +F +R                       A +AT  K   RF+ Y K    CG  GLPHL+++          ++ H G+ + PG +F+Y+AG IGW GR YL A    K PA  EIIID  LA   + KG +WPV A  +
Sbjct:   40 SALTTCSENTRFNER-----------------------ASQATTPKDIARFERYSKAS--CGDDGLPHLVIAATIEPWGALANRHHEGDILIPGHIFIYVAGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEANKQ 164          
The following BLAST results are available for this feature:
BLAST of EY650041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_ODOSI5.391e-3548.08Photosystem I reaction center subunit III OS=Odont... [more]
PSAF_CYACA4.723e-3148.23Photosystem I reaction center subunit III OS=Cyani... [more]
PSAF_SYNP61.795e-3049.02Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_THEEB1.422e-2745.21Photosystem I reaction center subunit III OS=Therm... [more]
PSAF_SYNEN1.422e-2745.21Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_SYNY33.278e-2441.67Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_MASLA1.055e-2241.56Photosystem I reaction center subunit III OS=Masti... [more]
PSAF_ANAVT9.870e-2139.22Photosystem I reaction center subunit III OS=Anaba... [more]
PSAF_ANASP1.684e-2038.56Photosystem I reaction center subunit III OS=Anaba... [more]
PSAF_PROMA2.972e-1736.00Photosystem I reaction center subunit III OS=Proch... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-E08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650041 ID=EY650041; Name=EY650041; organism=Citrus sinensis; type=EST; length=872bp
CTCACCCTGAAAGAAAAGAAGAAAAGGAAAAAGAAGAGTCTCTGACAATT
CCAACAAATCTTTCAAAACCCCTATTGAAGCCAAGATCAAACTCTCAGTT
GAGCCATGCAAAATTATCGAAACAAATGATCACGTGCTCTTCTTCTGCTG
GTTCTGAAGAGACTTCCTCTTCTTCTGGCAAGGCCGCCAAGCCGCTCCAG
GCTTTCTCAGCAGCCCTTGCGCTTTCCTCAATTCTGCTATCAGCCCCACA
GCCCGCAGTTGCCGACATCAGCGGCCTCACCCCCTGCAAAGAGTCCAAAC
AATTCGCCAAGCGCGAGAAGCAGCAGCTCAAGAAGCTCGAGTCTTCACTA
AAACTGTACGCTCCCGACAGCGCCCCGGCTCTCGCAATCAAAGCCACCAT
GGAGAAGACGAAACGGCGGTTTGACAACTACGGGAAGTACGGGTTGCTGT
GCGGGTCANATGGGTTGCCGCATCTGATTGTGAGCGGTGACCAGAGGCAC
TGGGGTGAGTTTATCACTCCGGGGTTGTTGTTTTTGTACATAGCTGGATG
GATCGGGTGGGTTGGCAGGAGCTACTTGATCGCCATTAGCGGTGAAAAGA
AGCCGGCCATGAAGGAGATCATCATTGATGTTCCTTTGGCTTCCANGTTG
GTCTTCAAAGGTTTTAGCTGGCCTGTTGCTGCTACAGNAGAGTCGTTAAT
GGTGAAACTTGTGCAAGGGACGTTATCATNCTATCTATTTCTATCTCCTC
TGGTGATCTCAATTTCTTTGGTGGAATTTTCATTTCCATTTTATTTGTGT
CATGTGGTGGTGCTTACCTGCCCTGTGTATTGAGGGCGGGTGATTATCAT
GGAATATCAATCTGGGAAAAAA
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