EY650041

Overview
NameEY650041
Unique NameEY650041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY650041 vs. ExPASy Swiss-Prot
Match: PSAF_GLOVI (Photosystem I reaction center subunit III OS=Gloeobacter violaceus GN=psaF PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.380e-14
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 3 
Query:  408 TKRRFDNYGKYGLLCGSXGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASXLVFKGFSWPVAATXESLMVKL 710
            TK++F+ Y      CG  G PHLI SG     G+F+ P +LFL+IAG +GW GR YL     E K    EIIID+P A   +  G  WPV A  E +  K+
Sbjct:   75 TKQKFERYDT--AYCGQDGYPHLITSGQLDRAGDFLIPSVLFLWIAGALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKI 169
The following BLAST results are available for this feature:
BLAST of EY650041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_GLOVI1.380e-1443.56Photosystem I reaction center subunit III OS=Gloeo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-E08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650041 ID=EY650041; Name=EY650041; organism=Citrus sinensis; type=EST; length=872bp
CTCACCCTGAAAGAAAAGAAGAAAAGGAAAAAGAAGAGTCTCTGACAATT
CCAACAAATCTTTCAAAACCCCTATTGAAGCCAAGATCAAACTCTCAGTT
GAGCCATGCAAAATTATCGAAACAAATGATCACGTGCTCTTCTTCTGCTG
GTTCTGAAGAGACTTCCTCTTCTTCTGGCAAGGCCGCCAAGCCGCTCCAG
GCTTTCTCAGCAGCCCTTGCGCTTTCCTCAATTCTGCTATCAGCCCCACA
GCCCGCAGTTGCCGACATCAGCGGCCTCACCCCCTGCAAAGAGTCCAAAC
AATTCGCCAAGCGCGAGAAGCAGCAGCTCAAGAAGCTCGAGTCTTCACTA
AAACTGTACGCTCCCGACAGCGCCCCGGCTCTCGCAATCAAAGCCACCAT
GGAGAAGACGAAACGGCGGTTTGACAACTACGGGAAGTACGGGTTGCTGT
GCGGGTCANATGGGTTGCCGCATCTGATTGTGAGCGGTGACCAGAGGCAC
TGGGGTGAGTTTATCACTCCGGGGTTGTTGTTTTTGTACATAGCTGGATG
GATCGGGTGGGTTGGCAGGAGCTACTTGATCGCCATTAGCGGTGAAAAGA
AGCCGGCCATGAAGGAGATCATCATTGATGTTCCTTTGGCTTCCANGTTG
GTCTTCAAAGGTTTTAGCTGGCCTGTTGCTGCTACAGNAGAGTCGTTAAT
GGTGAAACTTGTGCAAGGGACGTTATCATNCTATCTATTTCTATCTCCTC
TGGTGATCTCAATTTCTTTGGTGGAATTTTCATTTCCATTTTATTTGTGT
CATGTGGTGGTGCTTACCTGCCCTGTGTATTGAGGGCGGGTGATTATCAT
GGAATATCAATCTGGGAAAAAA
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